PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

ORGLA03G0176000.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 177aa MW: 19943.6 Da PI: 10.2203

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA03G0176000.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	39.7	1.1e-12	49	101	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqkyl 48 +WT+eEd l+++ ++ G ++W+++a+ m +R++ qc++rw+++l ORGLA03G0176000.1 49 AWTPEEDACLARLAAENGFRHWRRVAEGMAaarsgrrPRRSPGQCRDRWRDHL 101 7*************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.652	42	105	IPR017930	Myb domain
SMART	SM00717	3.5E-10	46	103	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.29E-15	49	124	IPR009057	Homeodomain-like
Pfam	PF00249	1.9E-12	49	101	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.1E-15	49	118	IPR009057	Homeodomain-like
CDD	cd00167	1.34E-5	49	101	No hit	No description
PROSITE profile	PS50090	5.935	102	156	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MELQGLEQEA AVQPPASAAF PSSAEEAAAA ASPTSGGKRI VLRIRLPPAW TPEEDACLAR 60 LAAENGFRHW RRVAEGMAAA RSGRRPRRSP GQCRDRWRDH LARDVYHRPF TADDDAELAR 120 LLLKRDGDGE RSWKDISRAA YCRTSRGMRR RWGELRDSDA FLRKLWCPPP PPMQPSC

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA03G0176000.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC213125	0.0	AC213125.2 Oryza glaberrima clone OG_BBa0015M04, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006645625.1	4e-59	PREDICTED: transcription factor MYB44-like
TrEMBL	I1PBL4	1e-122	I1PBL4_ORYGL; Uncharacterized protein
STRING	ORGLA03G0176000.1	1e-123	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8360	13	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	3e-06	myb domain protein 73