PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0174600.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 305aa    MW: 33938.9 Da    PI: 6.3506
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0174600.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.31.6e-35371292103
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Fl+k+y++++d+++++++sw e++ +fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F+kg k+l
  ORGLA03G0174600.1  37 FLSKTYQLVDDPSTDDVVSWGEDEATFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVADR---------WEFANEFFRKGAKHL 119
                        9****************************************************************999.........*************** PP

                        XXXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkkse 103
                        l++i+r+ks+
  ORGLA03G0174600.1 120 LSEIHRRKSS 129
                        *******987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004156.5E-5833126IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.52E-3334126IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.1E-3734126IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.7E-203760IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.4E-3137126IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.7E-207587IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434076100IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.7E-2088100IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MAFLVERCGG EMVVSMERSH GRSTTTAAAV TAAPAPFLSK TYQLVDDPST DDVVSWGEDE  60
ATFVVWRPPE FARDLLPNYF KHNNFSSFVR QLNTYGFRKI VADRWEFANE FFRKGAKHLL  120
SEIHRRKSSS CSQPQPPPPF PMHQHYPLSL FSPPTTTRSP PVGAAAAAAY HFQEEYCSSP  180
ADYAGGGGDL LAALSEDNRQ LRRRNSLLLS ELAHMRKLYN DIIYFLQNHV EPVAPPPLAA  240
ATSCRLVELG PSTTERRRSA ASPSGDNDDD AAVRLFGVRL DDDHGKKRRV QLVQEDEGDE  300
QGSEG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-212712620129Heat shock factor protein 1
5d5v_B2e-212712620129Heat shock factor protein 1
5d5v_D2e-212712620129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0174600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1257840.0AC125784.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0012F18, from chromosome 3, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627976.10.0heat stress transcription factor B-4d
RefseqXP_025880033.10.0heat stress transcription factor B-4d
RefseqXP_025880034.10.0heat stress transcription factor B-4d
RefseqXP_025880035.10.0heat stress transcription factor B-4d
RefseqXP_025880036.10.0heat stress transcription factor B-4d
SwissprotQ10KX80.0HFB4D_ORYSJ; Heat stress transcription factor B-4d
TrEMBLA0A0D9Z7S90.0A0A0D9Z7S9_9ORYZ; Uncharacterized protein
TrEMBLI1PBK00.0I1PBK0_ORYGL; Uncharacterized protein
STRINGOGLUM03G19040.10.0(Oryza glumipatula)
STRINGORGLA03G0174600.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.18e-66heat shock transcription factor B4