 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
ORGLA03G0122000.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
bHLH |
| Protein Properties |
Length: 344aa MW: 37776.9 Da PI: 10.2479 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| ORGLA03G0122000.1 | genome | AGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 12.1 | 0.00036 | 231 | 269 | 11 | 54 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
+R +++ +++ L++l+ + +K + a++L +A +I++L
ORGLA03G0122000.1 231 KRSQKLGDRITALQQLVSPY-----GKTDTASVLHEAAACIRQL 269
799999***********999.....9*****************9 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 344 aa
Download sequence Send
to blast |
MVIASNKHEL MKYLSLTLER LQKQQLCRWI RHDDLDMLTD ELERKRYRTL ILMADTFLAN 60
DLRQFPSAKR KASLYTSTLA NIFILMLKVS SVAVKCEASN SPSTTVGFDR MIAADYDLFH 120
HMSFSPSLQN LQSPTFFTTR SSESYLGESS IYGGGARPAL AQFSYSQPIA ATSAAHLVRW 180
TAAGEPMTGD GGFRSSKRLK TATTATTQPP RHGVKCHAKP RNQTTKATCN KRSQKLGDRI 240
TALQQLVSPY GKTDTASVLH EAAACIRQLH QQIQILTAPY PGTSSSSASS QQQDAGGGGG 300
TATELRRRGL CVAALSPAVV SLAAEGGRRR TDVEDQKRIW FSNQ
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC083942 | 3e-83 | AC083942.8 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0002D01, from chromosome 3, complete sequence. |
| GenBank | AC137069 | 3e-83 | AC137069.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0009C19, from chromosome 3, complete sequence. |
| GenBank | AP014959 | 3e-83 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012611 | 3e-83 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
