PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0122000.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 344aa    MW: 37776.9 Da    PI: 10.2479
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0122000.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.10.000362312691154
                        HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        +R +++ +++  L++l+ +      +K + a++L +A  +I++L
  ORGLA03G0122000.1 231 KRSQKLGDRITALQQLVSPY-----GKTDTASVLHEAAACIRQL 269
                        799999***********999.....9*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.048220269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-5231278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-8231280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MVIASNKHEL MKYLSLTLER LQKQQLCRWI RHDDLDMLTD ELERKRYRTL ILMADTFLAN  60
DLRQFPSAKR KASLYTSTLA NIFILMLKVS SVAVKCEASN SPSTTVGFDR MIAADYDLFH  120
HMSFSPSLQN LQSPTFFTTR SSESYLGESS IYGGGARPAL AQFSYSQPIA ATSAAHLVRW  180
TAAGEPMTGD GGFRSSKRLK TATTATTQPP RHGVKCHAKP RNQTTKATCN KRSQKLGDRI  240
TALQQLVSPY GKTDTASVLH EAAACIRQLH QQIQILTAPY PGTSSSSASS QQQDAGGGGG  300
TATELRRRGL CVAALSPAVV SLAAEGGRRR TDVEDQKRIW FSNQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0122000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0839423e-83AC083942.8 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0002D01, from chromosome 3, complete sequence.
GenBankAC1370693e-83AC137069.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0009C19, from chromosome 3, complete sequence.
GenBankAP0149593e-83AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126113e-83CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630126.10.0transcription factor bHLH110 isoform X1
RefseqXP_015630127.10.0transcription factor bHLH110 isoform X1
TrEMBLI1PA240.0I1PA24_ORYGL; Uncharacterized protein
STRINGORGLA03G0122000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37582426
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.16e-17bHLH family protein