PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0111000.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 579aa    MW: 61284.7 Da    PI: 4.9191
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0111000.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS291.62.1e-891325291373
               GRAS   1 lvelLlecAeavss..gdlelaqalLarlselaspdgd......pmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalkl 83 
                        l +lL+++Aea+s   ++ ela+ +L rl+e++s ++       +m+Rlaa+ft AL+  l +s +   +  ++ ++++++   ++l+a+++
  ORGLA03G0111000.1 132 LLHLLMAAAEALSGphKSRELARVILVRLKEMVSHTAGanaaasNMERLAAHFTDALQGLLDGSHPVGGSGRQAAAAASHHhAGDVLTAFQM 223
                        579**********8557777************7766544566669******************888777766555554444499******** PP

               GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelg 173
                        ++++sP++kf+h+taNqaIleav+g++rvHi+D+di +G+QW++L+qa++sR+   ++p+lRiT+v+++  g +++++e   rL+ fA+++g
  ORGLA03G0111000.1 224 LQDMSPYMKFGHFTANQAILEAVSGDRRVHIVDYDIAEGIQWASLMQAMTSRAdgVPAPHLRITAVSRSGGGGARAVQEADARLSAFAASIG 315
                        *****************************************************666789*********7777******************** PP

               GRAS 174 vpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnse............. 251
                         pf+f     ++ e +++ + r+ +gEal+ n+vl+                 ++L+ +  l +k+v+vve+e + ++              
  ORGLA03G0111000.1 316 HPFSFGQCRLDSDERFRPATVRMVKGEALVANCVLHQAAATTTIRRP-TgSVASFLSGMALLGAKLVTVVEEEGEAEKDddgdsagdaaaaa 406
                        *******9999***********************9655554333333.247889*******************98866568999******** PP

               GRAS 252 ...sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakll 340
                            F++rf+e l+ ysa+ dslea++p++s+ r  vEr++l+++i  +v+ + +    + e+   W ++++ +GF++vpls ++ +qa+ll
  ORGLA03G0111000.1 407 aagGFVRRFMEELHRYSAVWDSLEAGFPTQSRVRGLVERVILAPNIAGAVSRAYRG--VDGERRCGWGQWMRGSGFTAVPLSCFNHSQARLL 496
                        ***************************************************99987..77888899************************** PP

               GRAS 341 lrkvksdgyrveee.sgslvlgWkdrpLvsvSaW 373
                        l  ++ dgy+vee   + +vlgWk r+L+s+S+W
  ORGLA03G0111000.1 497 LGLFN-DGYTVEETgPNKIVLGWKARRLMSASVW 529
                        *****.******99457788************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098547.817106510IPR005202Transcription factor GRAS
PfamPF035147.2E-87132529IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MEVTMEDVAG DFEFSGCGST TTTSSASSLD DGTGMCYAWG ELSPVADWAN FCCSDDDGGH  60
DLHGLIESML CDDTLVGVDD DGQAGLHHAD MFRDDLYCYG NGSNPSSTTT TNPGSPVFDD  120
QTQGCPEKGL RLLHLLMAAA EALSGPHKSR ELARVILVRL KEMVSHTAGA NAAASNMERL  180
AAHFTDALQG LLDGSHPVGG SGRQAAAAAS HHHAGDVLTA FQMLQDMSPY MKFGHFTANQ  240
AILEAVSGDR RVHIVDYDIA EGIQWASLMQ AMTSRADGVP APHLRITAVS RSGGGGARAV  300
QEADARLSAF AASIGHPFSF GQCRLDSDER FRPATVRMVK GEALVANCVL HQAAATTTIR  360
RPTGSVASFL SGMALLGAKL VTVVEEEGEA EKDDDGDSAG DAAAAAAAGG FVRRFMEELH  420
RYSAVWDSLE AGFPTQSRVR GLVERVILAP NIAGAVSRAY RGVDGERRCG WGQWMRGSGF  480
TAVPLSCFNH SQARLLLGLF NDGYTVEETG PNKIVLGWKA RRLMSASVWA PPPLPVPSSP  540
PEGVCQPVVG MAPVATGGFA RTEFDYIDSF LVEPAYALV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-451165312379Protein SCARECROW
5b3h_D1e-451165312379Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0111000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630025.10.0nodulation-signaling pathway 2 protein
TrEMBLI1P9R40.0I1P9R4_ORYGL; Uncharacterized protein
STRINGORGLA03G0111000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75803148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-94GRAS family protein