PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

ORGLA03G0090200.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 810aa MW: 87483.1 Da PI: 5.1686

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA03G0090200.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.1	2.4e-11	637	685	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN+++ L++l+P + +k Ka++L + ++Y++sLq ORGLA03G0090200.1 637 NSHSLAERFRREKINERMKLLQDLVPGC----NKITGKAMMLDEIINYVQSLQ 685 58************************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50053	8.96	1	88	IPR000626	Ubiquitin domain
Gene3D	G3DSA:3.10.20.90	9.5E-7	20	99	No hit	No description
SuperFamily	SSF81383	1.83E-13	337	392	IPR001810	F-box domain
PROSITE profile	PS50181	11.405	337	383	IPR001810	F-box domain
Gene3D	G3DSA:1.20.1280.50	2.1E-10	340	392	No hit	No description
Pfam	PF12937	4.6E-6	342	384	IPR001810	F-box domain
SMART	SM00256	1.5E-5	343	383	IPR001810	F-box domain
CDD	cd00083	2.97E-11	632	689	No hit	No description
SuperFamily	SSF47459	4.45E-17	632	700	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.2E-17	634	701	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.796	634	684	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.0E-9	637	685	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.3E-10	640	690	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 810 aa Download sequence Send to blast
MKLRLRSMDQ RGGAGGAAET HRVQLPDTAT LSDVKAFLAT KLSAAQPVPA ESVRLTLNRS 60 EELLTPDPSA TLPALGLASG DLLYFTLSPL PSPSPPPQPQ PQAQPLPRNP NPDVPSIAGA 120 ADPTKSPVES GSSSSMPQAL CTNPGLPVAS DPHHPPPDVV MAEAFAVIKS KSSLVVGATK 180 REMENVGGAD GTVICRLVVA LHAVLLDAGF LYANPVGSCL QLPQNWASGS FVPVSMKYTL 240 PELVEALPAV EEGMVAVLNY SLMGNFMMVY GHVPGATSGV RRLCLELPEL APLLYLDSDE 300 VSTAEEREIH ELWRVLKDEM CLPLMISLCQ LNNLSLPPCL MALPGDVKAK VLEFVPGVDL 360 ARVQCTCKEL RDLAADDNLW KKKCEMEFNT QDTCGCMMCK CIYSDQRKDI VLADKYTRGN 420 YMQKPVTQPG RWLIILVFHS LLCQYITIGL SLLWYHLVDL VQDAPAAGIH FDCIIPLPIN 480 PYQLPPSAGA CCSTTQASAS AKDGGNMYSP PCSAAASSQG HCFAVGANQL ASLDLAMDFD 540 EPILFPVHNA SLQEGIQFYN PTGDTQLSRN MSIDKCLKGS KRKGSGEGSS SLHSQEETGE 600 MPQRELSMEH AGEKAGDADA SREEYVHVRA KRGQATNSHS LAERFRREKI NERMKLLQDL 660 VPGCNKITGK AMMLDEIINY VQSLQRQVEF LSMKLSTISP ELNSDLDLQD ILCSQDARSA 720 FLGCSPQLSN AHPNLYRAAQ QCLSPPGLYG SVCVPNPADV HLARAAHLAS FPQQRGLIWD 780 EELRNIAPAG FASDAAGTSS LENSDSMKVE

Sequence ? help Back to Top

Protein Sequence Length: 810 aa Download sequence Send to blast

MKLRLRSMDQ RGGAGGAAET HRVQLPDTAT LSDVKAFLAT KLSAAQPVPA ESVRLTLNRS  60
EELLTPDPSA TLPALGLASG DLLYFTLSPL PSPSPPPQPQ PQAQPLPRNP NPDVPSIAGA  120
ADPTKSPVES GSSSSMPQAL CTNPGLPVAS DPHHPPPDVV MAEAFAVIKS KSSLVVGATK  180
REMENVGGAD GTVICRLVVA LHAVLLDAGF LYANPVGSCL QLPQNWASGS FVPVSMKYTL  240
PELVEALPAV EEGMVAVLNY SLMGNFMMVY GHVPGATSGV RRLCLELPEL APLLYLDSDE  300
VSTAEEREIH ELWRVLKDEM CLPLMISLCQ LNNLSLPPCL MALPGDVKAK VLEFVPGVDL  360
ARVQCTCKEL RDLAADDNLW KKKCEMEFNT QDTCGCMMCK CIYSDQRKDI VLADKYTRGN  420
YMQKPVTQPG RWLIILVFHS LLCQYITIGL SLLWYHLVDL VQDAPAAGIH FDCIIPLPIN  480
PYQLPPSAGA CCSTTQASAS AKDGGNMYSP PCSAAASSQG HCFAVGANQL ASLDLAMDFD  540
EPILFPVHNA SLQEGIQFYN PTGDTQLSRN MSIDKCLKGS KRKGSGEGSS SLHSQEETGE  600
MPQRELSMEH AGEKAGDADA SREEYVHVRA KRGQATNSHS LAERFRREKI NERMKLLQDL  660
VPGCNKITGK AMMLDEIINY VQSLQRQVEF LSMKLSTISP ELNSDLDLQD ILCSQDARSA  720
FLGCSPQLSN AHPNLYRAAQ QCLSPPGLYG SVCVPNPADV HLARAAHLAS FPQQRGLIWD  780
EELRNIAPAG FASDAAGTSS LENSDSMKVE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA03G0090200.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC135157	0.0	AC135157.2 Oryza sativa Japonica Group chromosome 3 clone OJ1017C11, complete sequence.
GenBank	AP014959	0.0	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	I1P956	0.0	I1P956_ORYGL; Uncharacterized protein
STRING	ORGLA03G0090200.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4536	29	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10120.1	2e-45	bHLH family protein