PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0090000.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 430aa    MW: 49627 Da    PI: 7.713
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0090000.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR171.32.2e-2288179190
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                        +fYn+YA+e+GFs+r+s+ ++  +++ i++rtf+Cs+eg+r  +k++      ++ +r+etr++C+a++k++   dg ++v++++ eH+H l
  ORGLA03G0090000.1  88 EFYNAYASEIGFSIRRSSYHYMGNTKIIKNRTFCCSREGTRGVDKRRealVYGNSFNRPETRCKCQACIKISFI-DGFYQVYHFVPEHSHIL 178
                        6****************************************999888666677888******************.***************99 PP

               FAR1  90 a 90 
                        a
  ORGLA03G0090000.1 179 A 179
                        7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.3E-1788179IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MPNNSMIPPS EASQLHDAGA SPMFLDNTFA ATTSFTNLVE PDDSSAGLGM KQIETDQGAN  60
EDSHTRKASE KMTPKVGMKF NSEQEAYEFY NAYASEIGFS IRRSSYHYMG NTKIIKNRTF  120
CCSREGTRGV DKRREALVYG NSFNRPETRC KCQACIKISF IDGFYQVYHF VPEHSHILAT  180
KSQAHQLRSQ RKVNEAQVAS VEVAKSVGIS TKAAVDMLAK QSCGYENLGF TRVDMKNKLY  240
SKRSLLTKQE EEEEFIKAWH QLHDKYELQQ NKWLQRIFDK RHQWALVYGR NTFSADMSTT  300
QRNESFKNEL KGYISVKYDM LTFFEHFDRL LGDKRYEEVK CDFRATQSTP RPKAELRILR  360
DVVEVYTPAI YKIFEEEVMQ TLNCDIFYCG DVDEQKVHKI KSHEDIEKCL KIRCNPDLET  420
SSSPQGVKEN
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0090000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0043810.0AP004381.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0025F03.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLI1P9540.0I1P954_ORYGL; Uncharacterized protein
STRINGORGLA03G0090000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-23FAR1-related sequence 5