PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HD-ZIP

Protein Properties

Length: 239aa MW: 26081.3 Da PI: 6.9419

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA03G0069400.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.8	8.8e-19	61	114	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++++eq + Le F+k+r++ + ++ +LA++lgL+ +qV vWFqNrRa++k ORGLA03G0069400.1 61 KKRRLSDEQARFLEMSFKKERKLETPRKVQLAAELGLDAKQVAVWFQNRRARHK 114 56689***********************************************99 PP
2	HD-ZIP_I/II	113.7	1.2e-36	61	151	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kkrrls+eq+++LE+sF++e+kLe+ rKv+la eLgl+++qvavWFqnrRAR+k+k +E+++++L++a+da++ +n++Le+e +L+e+l+ ORGLA03G0069400.1 61 KKRRLSDEQARFLEMSFKKERKLETPRKVQLAAELGLDAKQVAVWFQNRRARHKSKLMEEEFAKLRSAHDAVVLQNCHLETELLKLKERLA 151 9**************************************************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.827	56	116	IPR001356	Homeobox domain
SuperFamily	SSF46689	9.8E-17	56	115	IPR009057	Homeodomain-like
SMART	SM00389	1.6E-16	59	120	IPR001356	Homeobox domain
CDD	cd00086	7.32E-16	61	116	No hit	No description
Pfam	PF00046	2.8E-16	61	114	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	5.1E-17	61	114	IPR009057	Homeodomain-like
PRINTS	PR00031	5.3E-6	87	96	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	91	114	IPR017970	Homeobox, conserved site
PRINTS	PR00031	5.3E-6	96	112	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MSREEDEKLL FPSFAFPAEC FPEAATSGGE QKKARQRRRR KVKPEAAAAL AGESGGDEQA 60 KKRRLSDEQA RFLEMSFKKE RKLETPRKVQ LAAELGLDAK QVAVWFQNRR ARHKSKLMEE 120 EFAKLRSAHD AVVLQNCHLE TELLKLKERL ADVEEEKAKL AAVAAATTGG GGGGGGGSSS 180 PTSSSFSTVT YHPALAGQFG VEAAAEEADL TYMSEYAYNS YMLELAAAGY CGGVYDQFS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	167	177	TGGGGGGGGGS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA03G0069400.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK073446	0.0	AK073446.1 Oryza sativa Japonica Group cDNA clone:J033043C24, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015629042.1	1e-173	homeobox-leucine zipper protein HOX12
Swissprot	Q10QF2	1e-174	HOX12_ORYSJ; Homeobox-leucine zipper protein HOX12
TrEMBL	A0A0D3FF18	1e-172	A0A0D3FF18_9ORYZ; Uncharacterized protein
TrEMBL	I1P8J8	1e-172	I1P8J8_ORYGL; Uncharacterized protein
STRING	OS03T0198600-01	1e-173	(Oryza sativa)
STRING	ORGLA03G0069400.1	1e-173	(Oryza glaberrima)
STRING	OBART03G07110.1	1e-173	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2006	38	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	6e-29	homeobox protein 40

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Gao S,Fang J,Xu F,Wang W,Chu C Rice HOX12 Regulates Panicle Exsertion by Directly Modulating the Expression of ELONGATED UPPERMOST INTERNODE1. Plant Cell, 2016. 28(3): p. 680-95 [PMID:26977084]