PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0058900.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 326aa    MW: 34986.6 Da    PI: 4.4391
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0058900.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.21.8e-1795144255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr+++ +g+W+AeIrdp+    +  r++lg+f  ae Aa a++ a+++++g
  ORGLA03G0058900.1  95 QYRGVRRRP-WGKWAAEIRDPV----KgIRVWLGTFTNAEAAALAYDDAARAIRG 144
                        69*******.**********75....44***********************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.88E-1694152No hitNo description
Gene3DG3DSA:3.30.730.101.3E-3095153IPR001471AP2/ERF domain
PROSITE profilePS5103223.39395152IPR001471AP2/ERF domain
SMARTSM003804.9E-3495158IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-2195153IPR016177DNA-binding domain
PfamPF008474.3E-1095144IPR001471AP2/ERF domain
PRINTSPR003671.9E-1296107IPR001471AP2/ERF domain
PRINTSPR003671.9E-12134154IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MCGGAILAEL IPSAPAARRV TAGHVWPGKK KGARADDFEA AFRDFDNDSD DEEMMVEEAE  60
EEEATSEHKP FVFRAKKARK AAAAAASSRR RKPAQYRGVR RRPWGKWAAE IRDPVKGIRV  120
WLGTFTNAEA AALAYDDAAR AIRGDRAKLN FPSATTPDTR KRGRATAAAA PAVKATPVIN  180
LVEEEEVAAA MASIKYEPET SESSESNALP DFSWQGMSAS DEFAVAAAAL DSDDDLAKKR  240
PRTEPEDTTT TTDSGSGDDT DALFDALLFA DQYNYFNGGA YESLDSLFSA DAVQTTAAAA  300
AANQGMGLWS FDDGCCLVDV EASLSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2092152263ATERF1
3gcc_A1e-2092152263ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
189101RRKPAQYRGVRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0058900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632219.11e-148ethylene-responsive transcription factor ERF073
TrEMBLI1P8930.0I1P893_ORYGL; Uncharacterized protein
STRINGORGLA03G0058900.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43712654
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.25e-18ERF family protein