PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0050600.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 358aa    MW: 38897.8 Da    PI: 6.841
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0050600.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.64.5e-18130183356
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rqV +WFqNrRa++k
  ORGLA03G0050600.1 130 KKRRLNVEQVRTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWK 183
                        4568999**********************************************9 PP
2HD-ZIP_I/II126.89.6e-41129218190
        HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                        ekkrrl+ eqv++LE++Fe  +kLeperK++lar+Lglqprqva+WFqnrRAR+ktkqlEkdy+aLkr++da+k+en++L +++++L++e
  ORGLA03G0050600.1 129 EKKRRLNVEQVRTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDALKRQLDAVKAENDALLNHNKKLQAE 218
                        69*************************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.45E-19122187IPR009057Homeodomain-like
PROSITE profilePS5007117.41125185IPR001356Homeobox domain
SMARTSM003891.2E-17128189IPR001356Homeobox domain
PfamPF000462.1E-15130183IPR001356Homeobox domain
CDDcd000869.62E-17130186No hitNo description
Gene3DG3DSA:1.10.10.607.9E-19132193IPR009057Homeodomain-like
PRINTSPR000311.3E-5156165IPR000047Helix-turn-helix motif
PROSITE patternPS000270160183IPR017970Homeobox, conserved site
PRINTSPR000311.3E-5165181IPR000047Helix-turn-helix motif
PfamPF021835.4E-11185218IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0048826Biological Processcotyledon morphogenesis
GO:0080022Biological Processprimary root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MASNGMASSP SSFFPPNFLL HMAQQQAAPP HDPQEHHHHH HHGHHGHHHE QQQQQQHHHH  60
LGPPPPPPPH PHNPFLPSSA QCPSLQEFRG MAPMLGKRPM SYGDGGGGGD EVNGGGEDEL  120
SDDGSQAGEK KRRLNVEQVR TLEKNFELGN KLEPERKMQL ARALGLQPRQ VAIWFQNRRA  180
RWKTKQLEKD YDALKRQLDA VKAENDALLN HNKKLQAEGR EAASELINLN KETEASCSNR  240
SENSSEINLD ISRTPPPDAA ALDAAPTAHH HHHGGGGGGG GMIPFYTSIA RPASGGGVDI  300
DQLLHSSSGG AGGPKMEHHG GGGNVQAASV DTASFGNLLC GVDEPPPFWP WPDHQHFH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177185RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00225DAPTransfer from AT1G69780Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0050600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0735560.0AC073556.11 Oryza sativa chromosome 3 BAC OSJNBa0091P11 genomic sequence, complete sequence.
GenBankAC1444910.0AC144491.1 Oryza sativa Japonica Group chromosome 3 clone OSJNAa0091P11, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629266.10.0homeobox-leucine zipper protein HOX21
SwissprotQ8S7W90.0HOX21_ORYSJ; Homeobox-leucine zipper protein HOX21
TrEMBLI1P8100.0I1P810_ORYGL; Uncharacterized protein
STRINGORGLA03G0050600.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22893894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.11e-65HD-ZIP family protein