PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0026100.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 420aa    MW: 45226.2 Da    PI: 4.8249
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0026100.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.5e-12182224754
                        HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                        ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  ORGLA03G0026100.1 182 MAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYVKEL 224
                        79*********************66......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.129175224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-16180253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-13181230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-9182224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.3E-16182245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.95E-5188229No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MELDEESFLD ELMSLRRDGS APWQAPPYPG GGGGGGMMMS DLLFYGGDGG SAEARGGMDA  60
SPFQELASMA APPPQHPHEE FNFDCLSEVC NPYRSCGAQL VPSEAASQTQ TQLTPLRDAM  120
VAEEETSGDK ALLHGGGGSS SPTFMFGGGA GESSEMMAGI RGVGGGVHPR SKLHGTPSKN  180
LMAERRRRKR LNDRLSMLRS IVPKISKMDR TSILGDTIDY VKELTERIKT LEEEIGATPE  240
ELDLLNTMKD SSSGNNNEML VRNSTKFDVE NRGSGNTRIE ICCPANPGVL LSTVSALEVL  300
GLEIEQCVVS CFSDFGMQAS CLQAGTGCIY MIFIIHDIGV IAIHAYALRS RNYSRSSTIY  360
EFIFISSGST SFLNTPESKL KICSSIVSFA FVNRYGSRPC DLSNIGFELN AKVPIVCTLA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183190ERRRRKRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0026100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0600290.0AK060029.1 Oryza sativa Japonica Group cDNA clone:006-303-F08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629094.10.0transcription factor bHLH93
TrEMBLI1P7B50.0I1P7B5_ORYGL; Uncharacterized protein
STRINGORGLA03G0026100.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13023799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10570.13e-53bHLH family protein