PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA03G0022700.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Nin-like

Protein Properties

Length: 942aa MW: 104562 Da PI: 5.881

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA03G0022700.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.4	2.8e-28	620	670	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl+dl+k+F++++k+AAk+Lgvc+T+LKriCRq+GI+RWP+Rkik++ ORGLA03G0022700.1 620 EKTVSLQDLRKHFAGSLKEAAKNLGVCPTTLKRICRQHGINRWPSRKIKKV 670 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.029	609	690	IPR003035	RWP-RK domain
Pfam	PF02042	6.9E-26	622	670	IPR003035	RWP-RK domain
Gene3D	G3DSA:3.10.20.240	1.1E-25	842	926	No hit	No description
SuperFamily	SSF54277	1.03E-22	842	926	No hit	No description
PROSITE profile	PS51745	23.255	844	927	IPR000270	PB1 domain
SMART	SM00666	2.0E-25	844	927	IPR000270	PB1 domain
CDD	cd06407	2.97E-43	845	926	No hit	No description
Pfam	PF00564	1.2E-17	845	926	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 942 aa Download sequence Send to blast
MEQKPSPPPP PRSDEEEDGL MGCGMGGTGN IAGGDLDLME EFLLATPGLD LSEFWHPGAA 60 SPFSPLFDIG SSVTTLTTPA PAAGEDDRDE AEMPSRGGGG LEVSPAHRGW TFQTAPQEVA 120 VEPTVKERLR RALERIASQS QSQAQRGDGE LLVQVWVPTR IGDRQVLTTC GQPFWLDRRN 180 QRLASYRTVS MKYQFSADES ARADLGLPGR VFVGRVPEWT PDVRYFSTEE YPRVQHAQYF 240 DIRGSVALPV FEPRSRACLG VVELVMTTQK VNYSAEIENI CNALKEVDLR SSDVSSDPRS 300 KVVDASYRAI IPEIMDVLRA VCDTHNLPLA QTWIPCICQA KRGSRHSDES YKHCVSTVDE 360 ACYVRDRSVL GFHQACSEHH LFRGEGVVGR AFGTNEPCFS PDITTYSKTQ YPLSHHAKLF 420 GLRAAVAIRL RSVKTGSLDF VLEFFLPMKC INTEEQRAML NSLSNTIQQV CYTLRVVKPK 480 ELVNDGPLEI SQPTRPEFYA KSVHENLDEL CSGINVPGRT TSLEASEEVS SWIASLVDAQ 540 NKGGKGEIDV DLPFGFSKQD DEGFSVTAGW HTSPVMAPDG SMFSGFKCHE DYDVKENTCS 600 SDPSNSNSDK AVEKRRTKTE KTVSLQDLRK HFAGSLKEAA KNLGVCPTTL KRICRQHGIN 660 RWPSRKIKKV GHSLKKLQMV IDSVHGPEGT VQLSSLYENF TKTTWSEREL QGDVHFPASE 720 QNFQLEPSVP DRPCEGRFTS HTSGSNSISP SCSQSSNSSL GCSSVPKTQQ QHGSAPQLAV 780 KEEISMDENQ CSTLIKSASH AEAELQMFVE ERPTMLFRSQ SQVLLSEHKP IENLSNMQKA 840 RSDSLKIKAI YGEERCIFRL QPSWGFQRLK EEIVKRFGIS QDTHVDLKYL DDESEWVLLT 900 CDADLLECID VYKSSSNQTV RILVNPSIQP LLNASFGQTG LS

Sequence ? help Back to Top

Protein Sequence Length: 942 aa Download sequence Send to blast

MEQKPSPPPP PRSDEEEDGL MGCGMGGTGN IAGGDLDLME EFLLATPGLD LSEFWHPGAA  60
SPFSPLFDIG SSVTTLTTPA PAAGEDDRDE AEMPSRGGGG LEVSPAHRGW TFQTAPQEVA  120
VEPTVKERLR RALERIASQS QSQAQRGDGE LLVQVWVPTR IGDRQVLTTC GQPFWLDRRN  180
QRLASYRTVS MKYQFSADES ARADLGLPGR VFVGRVPEWT PDVRYFSTEE YPRVQHAQYF  240
DIRGSVALPV FEPRSRACLG VVELVMTTQK VNYSAEIENI CNALKEVDLR SSDVSSDPRS  300
KVVDASYRAI IPEIMDVLRA VCDTHNLPLA QTWIPCICQA KRGSRHSDES YKHCVSTVDE  360
ACYVRDRSVL GFHQACSEHH LFRGEGVVGR AFGTNEPCFS PDITTYSKTQ YPLSHHAKLF  420
GLRAAVAIRL RSVKTGSLDF VLEFFLPMKC INTEEQRAML NSLSNTIQQV CYTLRVVKPK  480
ELVNDGPLEI SQPTRPEFYA KSVHENLDEL CSGINVPGRT TSLEASEEVS SWIASLVDAQ  540
NKGGKGEIDV DLPFGFSKQD DEGFSVTAGW HTSPVMAPDG SMFSGFKCHE DYDVKENTCS  600
SDPSNSNSDK AVEKRRTKTE KTVSLQDLRK HFAGSLKEAA KNLGVCPTTL KRICRQHGIN  660
RWPSRKIKKV GHSLKKLQMV IDSVHGPEGT VQLSSLYENF TKTTWSEREL QGDVHFPASE  720
QNFQLEPSVP DRPCEGRFTS HTSGSNSISP SCSQSSNSSL GCSSVPKTQQ QHGSAPQLAV  780
KEEISMDENQ CSTLIKSASH AEAELQMFVE ERPTMLFRSQ SQVLLSEHKP IENLSNMQKA  840
RSDSLKIKAI YGEERCIFRL QPSWGFQRLK EEIVKRFGIS QDTHVDLKYL DDESEWVLLT  900
CDADLLECID VYKSSSNQTV RILVNPSIQP LLNASFGQTG LS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA03G0022700.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK100046	0.0	AK100046.1 Oryza sativa Japonica Group cDNA clone:J013153P10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015629744.1	0.0	protein NLP1
Refseq	XP_015629745.1	0.0	protein NLP1
Swissprot	Q10S83	0.0	NLP1_ORYSJ; Protein NLP1
TrEMBL	I1P781	0.0	I1P781_ORYGL; Uncharacterized protein
STRING	ORGLA03G0022700.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11025	32	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]