PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA03G0013500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 649aa MW: 72694.1 Da PI: 6.474 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 182.6 | 9.4e-57 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhPtdeel+ +yLk+k++g+++el e+i+evd+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nratk+gyWkatgkd+ ORGLA03G0013500.1 6 LPPGFRFHPTDEELIIYYLKRKINGRQIEL-EIIPEVDLYKCEPWDLPeKsFLPSKDLEWYFFSPRDRKYPNGSRTNRATKAGYWKATGKDR 96 79****************************.99**************95334455777********************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +v s ++++vg+kktLv+y+grap+g++tdWvmheyrl ORGLA03G0013500.1 97 KVNS-QRRAVGMKKTLVYYRGRAPHGSRTDWVMHEYRL 133 ****.8999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.27E-64 | 4 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.547 | 6 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-29 | 7 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 649 aa Download sequence Send to blast |
MAPVSLPPGF RFHPTDEELI IYYLKRKING RQIELEIIPE VDLYKCEPWD LPEKSFLPSK 60 DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS QRRAVGMKKT LVYYRGRAPH 120 GSRTDWVMHE YRLDERECET DTGLQDAYAL CRVFKKTAPG PKIIEHYGVV HHHVEQPQWM 180 TSSIDRSPTL DVSCDGRGDD FESSSFSFPT ETPMDSMHGG FGMQMSAPHE DGKWMQFLSE 240 DAFNATNPFL TNPVSANFSC LPSKVDVALE CARLQHRLTL PPLEVEDFPQ DVSLDTKTGI 300 LRSNPNEVDI LQEFLSVATA SQELINGSTS SYPEMWLGAS TSSASYVNEL SSLVEMGGVG 360 TSNHHESARQ VEIADMEVFK DDKKRVENLR GVKLVNNDLG EIVVEGDESN PTEDIIAQYP 420 IKVTADNSGE AGHRMTDPTD VGGIDTAPIF SQSQPDDFAA GFDDVNPNAS FDLYEKVDVN 480 HRLFVSRVAA AKTFFHRIEP SKKVSFHSNP AATAVSKATE KFHFPVTTKV SGRVSIFSKF 540 KALIRDKFLM MRPSHSYQRL GSKETTVNEL LQIVSLLLAP KQINGCPTEQ ELVKKKAKEV 600 MKPGWGREGS NKLWLPLSKG KGISSMFLSG KWTFLTSALA ISTPAECDH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-55 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-55 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-55 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-55 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-55 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-55 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-55 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-55 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-55 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-55 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-55 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-55 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-55 | 1 | 162 | 12 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-55 | 1 | 162 | 12 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00212 | DAP | Transfer from AT1G65910 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA03G0013500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB265821 | 0.0 | AB265821.1 Oryza sativa Japonica Group RIM1 mRNA for NAC protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015628513.1 | 0.0 | NAC domain-containing protein 45 isoform X1 | ||||
Refseq | XP_015628514.1 | 0.0 | NAC domain-containing protein 45 isoform X1 | ||||
Refseq | XP_015628515.1 | 0.0 | NAC domain-containing protein 45 isoform X1 | ||||
Refseq | XP_015628518.1 | 0.0 | NAC domain-containing protein 45 isoform X1 | ||||
Refseq | XP_015628520.1 | 0.0 | NAC domain-containing protein 45 isoform X1 | ||||
Refseq | XP_025879975.1 | 0.0 | NAC domain-containing protein 45 isoform X1 | ||||
Refseq | XP_025879976.1 | 0.0 | NAC domain-containing protein 45 isoform X1 | ||||
Refseq | XP_025879977.1 | 0.0 | NAC domain-containing protein 45 isoform X1 | ||||
Refseq | XP_025879978.1 | 0.0 | NAC domain-containing protein 45 isoform X1 | ||||
Refseq | XP_025879979.1 | 0.0 | NAC domain-containing protein 45 isoform X1 | ||||
TrEMBL | A0A0D3FD38 | 0.0 | A0A0D3FD38_9ORYZ; Uncharacterized protein | ||||
TrEMBL | I1P6Y9 | 0.0 | I1P6Y9_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA03G0013500.1 | 0.0 | (Oryza glaberrima) | ||||
STRING | OBART03G01580.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6624 | 36 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65910.1 | 1e-128 | NAC domain containing protein 28 |