PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0013500.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 649aa    MW: 72694.1 Da    PI: 6.474
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0013500.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM182.69.4e-5761331128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                        lppGfrFhPtdeel+ +yLk+k++g+++el e+i+evd+yk+ePwdLp k  + +++ ewyfFs+rd+ky++g+r+nratk+gyWkatgkd+
  ORGLA03G0013500.1   6 LPPGFRFHPTDEELIIYYLKRKINGRQIEL-EIIPEVDLYKCEPWDLPeKsFLPSKDLEWYFFSPRDRKYPNGSRTNRATKAGYWKATGKDR 96 
                        79****************************.99**************95334455777********************************** PP

                NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +v s ++++vg+kktLv+y+grap+g++tdWvmheyrl
  ORGLA03G0013500.1  97 KVNS-QRRAVGMKKTLVYYRGRAPHGSRTDWVMHEYRL 133
                        ****.8999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-644156IPR003441NAC domain
PROSITE profilePS5100561.5476156IPR003441NAC domain
PfamPF023651.5E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 649 aa     Download sequence    Send to blast
MAPVSLPPGF RFHPTDEELI IYYLKRKING RQIELEIIPE VDLYKCEPWD LPEKSFLPSK  60
DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS QRRAVGMKKT LVYYRGRAPH  120
GSRTDWVMHE YRLDERECET DTGLQDAYAL CRVFKKTAPG PKIIEHYGVV HHHVEQPQWM  180
TSSIDRSPTL DVSCDGRGDD FESSSFSFPT ETPMDSMHGG FGMQMSAPHE DGKWMQFLSE  240
DAFNATNPFL TNPVSANFSC LPSKVDVALE CARLQHRLTL PPLEVEDFPQ DVSLDTKTGI  300
LRSNPNEVDI LQEFLSVATA SQELINGSTS SYPEMWLGAS TSSASYVNEL SSLVEMGGVG  360
TSNHHESARQ VEIADMEVFK DDKKRVENLR GVKLVNNDLG EIVVEGDESN PTEDIIAQYP  420
IKVTADNSGE AGHRMTDPTD VGGIDTAPIF SQSQPDDFAA GFDDVNPNAS FDLYEKVDVN  480
HRLFVSRVAA AKTFFHRIEP SKKVSFHSNP AATAVSKATE KFHFPVTTKV SGRVSIFSKF  540
KALIRDKFLM MRPSHSYQRL GSKETTVNEL LQIVSLLLAP KQINGCPTEQ ELVKKKAKEV  600
MKPGWGREGS NKLWLPLSKG KGISSMFLSG KWTFLTSALA ISTPAECDH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-55116212171NO APICAL MERISTEM PROTEIN
1ut4_B1e-55116212171NO APICAL MERISTEM PROTEIN
1ut7_A1e-55116212171NO APICAL MERISTEM PROTEIN
1ut7_B1e-55116212171NO APICAL MERISTEM PROTEIN
3swm_A1e-55116215174NAC domain-containing protein 19
3swm_B1e-55116215174NAC domain-containing protein 19
3swm_C1e-55116215174NAC domain-containing protein 19
3swm_D1e-55116215174NAC domain-containing protein 19
3swp_A1e-55116215174NAC domain-containing protein 19
3swp_B1e-55116215174NAC domain-containing protein 19
3swp_C1e-55116215174NAC domain-containing protein 19
3swp_D1e-55116215174NAC domain-containing protein 19
4dul_A1e-55116212171NAC domain-containing protein 19
4dul_B1e-55116212171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00212DAPTransfer from AT1G65910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0013500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2658210.0AB265821.1 Oryza sativa Japonica Group RIM1 mRNA for NAC protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628513.10.0NAC domain-containing protein 45 isoform X1
RefseqXP_015628514.10.0NAC domain-containing protein 45 isoform X1
RefseqXP_015628515.10.0NAC domain-containing protein 45 isoform X1
RefseqXP_015628518.10.0NAC domain-containing protein 45 isoform X1
RefseqXP_015628520.10.0NAC domain-containing protein 45 isoform X1
RefseqXP_025879975.10.0NAC domain-containing protein 45 isoform X1
RefseqXP_025879976.10.0NAC domain-containing protein 45 isoform X1
RefseqXP_025879977.10.0NAC domain-containing protein 45 isoform X1
RefseqXP_025879978.10.0NAC domain-containing protein 45 isoform X1
RefseqXP_025879979.10.0NAC domain-containing protein 45 isoform X1
TrEMBLA0A0D3FD380.0A0A0D3FD38_9ORYZ; Uncharacterized protein
TrEMBLI1P6Y90.0I1P6Y9_ORYGL; Uncharacterized protein
STRINGORGLA03G0013500.10.0(Oryza glaberrima)
STRINGOBART03G01580.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66243651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-128NAC domain containing protein 28