PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA03G0008300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Trihelix | ||||||||
Protein Properties | Length: 712aa MW: 75300.8 Da PI: 7.2458 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 98.8 | 4.6e-31 | 62 | 146 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r+em+ ++r+++lk+plWeevs+k++e g++rs+k+C+ek+en+ k+yk++k+g+ +r ++ +t+++f++lea ORGLA03G0008300.1 62 RWPRQETLALLKIRSEMDAAFREAALKGPLWEEVSRKLAEMGYNRSAKKCREKFENVDKYYKRTKDGRAGR--GDGKTYRFFTELEA 146 8********************************************************************97..77778******985 PP | |||||||
2 | trihelix | 109.6 | 2e-34 | 417 | 502 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev+aLi++r+eme+r++++ k+plWe++s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpy++ql+a ORGLA03G0008300.1 417 RWPKAEVHALIQLRTEMETRYQDSGPKGPLWEDISAGMRRLGYSRSSKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYYHQLDA 502 8*********************************************************************8.99***********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.0018 | 59 | 121 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 5.68E-29 | 61 | 126 | No hit | No description |
PROSITE profile | PS50090 | 6.992 | 61 | 119 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 1.0E-21 | 61 | 147 | No hit | No description |
PROSITE profile | PS50090 | 7.213 | 410 | 474 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.0037 | 414 | 476 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.1E-4 | 415 | 473 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 1.6E-23 | 416 | 503 | No hit | No description |
CDD | cd12203 | 8.86E-30 | 417 | 481 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 712 aa Download sequence Send to blast |
MPPFSAAGSE GAPSPISSRP PPPEQAAAAA AAEEQLNGSS LEHDGVLGGE EGDRGGSSAG 60 NRWPRQETLA LLKIRSEMDA AFREAALKGP LWEEVSRKLA EMGYNRSAKK CREKFENVDK 120 YYKRTKDGRA GRGDGKTYRF FTELEALHGA AAATARPPPV SLAPAPVAVA PPATPAGLSA 180 LRVHAAPPPP VKQHAAPPPP VMDAAACVMT MDDVSFSSGS DTEETAEEGG KRKRRGGGGI 240 GGGGGGGKAM RMFEGLMRQV MERQEAMQQR LLEAIERRDQ ERMIREEAWR RQEVARLARE 300 QDALAQERAI AASRDAAVIS FIQRVTGQSI TAPPPPPLQP TPVASAAPPP PPQHHHQQTP 360 PPIQIQPHHI MPMTPQPQLQ PPQPQSKEAN TVVRAAPPTQ EQHDTAASGG GGASSSRWPK 420 AEVHALIQLR TEMETRYQDS GPKGPLWEDI SAGMRRLGYS RSSKRCKEKW ENINKYFKKV 480 KESNKKRPED SKTCPYYHQL DALYRTKAAN AAAAASASPA PATTTVLAPV PLSQTPPHVD 540 HGGSNGNGNG WASANNGGGG SSSGGMQTKA SNNGTATAGG LPVVSVAGGN GNGVAATTDN 600 KGSKQVPVAK ETAGQRQPQP LAMNHNYGND RMADDMDSDS MDDDDDDDEF DDDDDIGGGK 660 MQVQYEIQRP QLQNQNVVVG RPNASGGGAP TTPAGPPPPA ATSGTSFLAC VQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 234 | 247 | RGGGGIGGGGGGGK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA03G0008300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK241800 | 0.0 | AK241800.1 Oryza sativa Japonica Group cDNA, clone: J065208I24, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015628078.1 | 0.0 | trihelix transcription factor GTL1 | ||||
TrEMBL | I1P6T7 | 0.0 | I1P6T7_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA03G0008300.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP606 | 38 | 175 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76880.1 | 1e-47 | Trihelix family protein |