PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0008300.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 712aa    MW: 75300.8 Da    PI: 7.2458
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0008300.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix98.84.6e-3162146187
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                        rW++qe+laL+++r+em+ ++r+++lk+plWeevs+k++e g++rs+k+C+ek+en+ k+yk++k+g+ +r  ++ +t+++f++lea
  ORGLA03G0008300.1  62 RWPRQETLALLKIRSEMDAAFREAALKGPLWEEVSRKLAEMGYNRSAKKCREKFENVDKYYKRTKDGRAGR--GDGKTYRFFTELEA 146
                        8********************************************************************97..77778******985 PP

2trihelix109.62e-34417502187
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                        rW+k ev+aLi++r+eme+r++++  k+plWe++s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpy++ql+a
  ORGLA03G0008300.1 417 RWPKAEVHALIQLRTEMETRYQDSGPKGPLWEDISAGMRRLGYSRSSKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYYHQLDA 502
                        8*********************************************************************8.99***********85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.001859121IPR001005SANT/Myb domain
CDDcd122035.68E-2961126No hitNo description
PROSITE profilePS500906.99261119IPR017877Myb-like domain
PfamPF138371.0E-2161147No hitNo description
PROSITE profilePS500907.213410474IPR017877Myb-like domain
SMARTSM007170.0037414476IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-4415473IPR009057Homeodomain-like
PfamPF138371.6E-23416503No hitNo description
CDDcd122038.86E-30417481No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 712 aa     Download sequence    Send to blast
MPPFSAAGSE GAPSPISSRP PPPEQAAAAA AAEEQLNGSS LEHDGVLGGE EGDRGGSSAG  60
NRWPRQETLA LLKIRSEMDA AFREAALKGP LWEEVSRKLA EMGYNRSAKK CREKFENVDK  120
YYKRTKDGRA GRGDGKTYRF FTELEALHGA AAATARPPPV SLAPAPVAVA PPATPAGLSA  180
LRVHAAPPPP VKQHAAPPPP VMDAAACVMT MDDVSFSSGS DTEETAEEGG KRKRRGGGGI  240
GGGGGGGKAM RMFEGLMRQV MERQEAMQQR LLEAIERRDQ ERMIREEAWR RQEVARLARE  300
QDALAQERAI AASRDAAVIS FIQRVTGQSI TAPPPPPLQP TPVASAAPPP PPQHHHQQTP  360
PPIQIQPHHI MPMTPQPQLQ PPQPQSKEAN TVVRAAPPTQ EQHDTAASGG GGASSSRWPK  420
AEVHALIQLR TEMETRYQDS GPKGPLWEDI SAGMRRLGYS RSSKRCKEKW ENINKYFKKV  480
KESNKKRPED SKTCPYYHQL DALYRTKAAN AAAAASASPA PATTTVLAPV PLSQTPPHVD  540
HGGSNGNGNG WASANNGGGG SSSGGMQTKA SNNGTATAGG LPVVSVAGGN GNGVAATTDN  600
KGSKQVPVAK ETAGQRQPQP LAMNHNYGND RMADDMDSDS MDDDDDDDEF DDDDDIGGGK  660
MQVQYEIQRP QLQNQNVVVG RPNASGGGAP TTPAGPPPPA ATSGTSFLAC VQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1234247RGGGGIGGGGGGGK
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0008300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2418000.0AK241800.1 Oryza sativa Japonica Group cDNA, clone: J065208I24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628078.10.0trihelix transcription factor GTL1
TrEMBLI1P6T70.0I1P6T7_ORYGL; Uncharacterized protein
STRINGORGLA03G0008300.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-47Trihelix family protein