 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
ORGLA02G0333700.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
TCP |
| Protein Properties |
Length: 236aa MW: 24165.1 Da PI: 10.7618 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| ORGLA02G0333700.1 | genome | AGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 127.4 | 1.4e-39 | 31 | 141 | 2 | 95 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg... 88
a++k +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ +++s +s++ ++s +
ORGLA02G0333700.1 31 AVRKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStsSPSSLRSNSTSNS-Ndll 121
789*************************************************************99999888755555555444444.3588 PP
TCP 89 .................kaaksaa 95
+ ++
ORGLA02G0333700.1 122 lpraapfilgkrlraadD----HT 141
887777777766533322....22 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 236 aa
Download sequence Send
to blast |
MTTRPDGGGG GGGAPDKQLV PASNANGTAL AVRKPPSKDR HSKVDGRGRR IRMPIICAAR 60
VFQLTRELGH KSDGQTIEWL LRQAEPSIIA ATGTGTTPAS FSTSSPSSLR SNSTSNSNDL 120
LLPRAAPFIL GKRLRAADDH TTSPAPAPDA TAPTQAFWAL PARADFGQLW SFAAAPEMMV 180
AAAAAPAMPG EASAARVGNY LPMAQGNLNL LASFSGGPGG AGATAATGRP EEESAR
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AK240798 | 0.0 | AK240798.1 Oryza sativa Japonica Group cDNA, clone: J065002G04, full insert sequence. |
| GenBank | AP004776 | 0.0 | AP004776.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0452F04. |
| GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
