PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0331100.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 327aa    MW: 34045.6 Da    PI: 8.4912
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0331100.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.00054117139123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        y+C+ C+k+F++   L  H  +H
  ORGLA02G0331100.1 117 YECKTCNKCFPTFQALGGHRASH 139
                        99**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.56E-8116139No hitNo description
PfamPF139121.9E-11116141IPR007087Zinc finger, C2H2
SMARTSM003550.094117139IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.097117144IPR007087Zinc finger, C2H2
PROSITE patternPS000280119139IPR007087Zinc finger, C2H2
SuperFamilySSF576671.56E-8210237No hitNo description
PfamPF139129.1E-13214238IPR007087Zinc finger, C2H2
PROSITE profilePS501579.349215237IPR007087Zinc finger, C2H2
SMARTSM003550.026215237IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280217237IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MSVEDKHAGF VKRKRTKRPR HHAAPASSSE STTTEEEDMA HCLILLAQGA AVVDSKPSTP  60
APPPPPPAQP PVLAAPAPAP PPPQPPVVVV KSERYTSRKY TEAATTADGV RAGFYVYECK  120
TCNKCFPTFQ ALGGHRASHK KPRLPGADDD NVNNVTNTNA IVVKSKPPLT TTTTPSAPSP  180
PPPQADAVVV PDVTTVLSLN NVAAAGSIIN KLRVHECSIC GAEFGSGQAL GGHMRRHRPL  240
HAPPERAATT AATTAATATA PDTKKEGSTG INLELDLNLP APSDEESVSP PPPPPPPVLL  300
ALGGQFNDGK KPILQLTASA ALVGCHY
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0331100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039890.0AP003989.4 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1063_D06.
GenBankAP0040260.0AP004026.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1136_C04.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623775.10.0zinc finger protein ZAT5
TrEMBLI1P5Q50.0I1P5Q5_ORYGL; Uncharacterized protein
STRINGORGLA02G0331100.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20133285
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.14e-28C2H2 family protein