PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA02G0311000.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 440aa MW: 44442.3 Da PI: 6.1835

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA02G0311000.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37	6e-12	222	267	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq ORGLA02G0311000.1 222 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 267 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.37E-17	215	277	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.39	217	266	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.8E-16	219	276	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.94E-13	221	271	No hit	No description
Pfam	PF00010	2.9E-9	222	267	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-13	223	272	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 440 aa Download sequence Send to blast
MQPNARQMHG GGGGGGGQDD FFDQMLSTLP AVWSELGSGK PAWDLTAGAV GGGGGASDDH 60 SAAAFDDSAL LASRLRQHQI DGGGDKPIML QLSDLHRHHG LAAGDDSGGA AGFLPLSLFA 120 DRSQDDIDAA FKSPNGARGD HALYNGFGAA GMHGAAAMQP PPFGQVRSMP AQSFGGGAAA 180 SGGGGGGSAS AAAAAGASSG GGAAAPPRQR QRARRGQATD PHSIAERLRR ERIAERMKAL 240 QELVPNANKT DKASMLDEII DYVKFLQLQV KVLSMSRLGG ASAVAPLVAN MSSESNGNGN 300 ATSSSGNGEA ANGSSNGDNN RGGTLRVTEQ QVAKLMEEDM GSAMQYLQGK GLCLMPISLA 360 TAISSATSSS LLPRTGGGAG GSLHEGGNGT SPPLVNGAAT GCDDSGVFFS VKFVVELSFL 420 LLNEDCRGKE ESKLLVQKGP

Sequence ? help Back to Top

Protein Sequence Length: 440 aa Download sequence Send to blast

MQPNARQMHG GGGGGGGQDD FFDQMLSTLP AVWSELGSGK PAWDLTAGAV GGGGGASDDH  60
SAAAFDDSAL LASRLRQHQI DGGGDKPIML QLSDLHRHHG LAAGDDSGGA AGFLPLSLFA  120
DRSQDDIDAA FKSPNGARGD HALYNGFGAA GMHGAAAMQP PPFGQVRSMP AQSFGGGAAA  180
SGGGGGGSAS AAAAAGASSG GGAAAPPRQR QRARRGQATD PHSIAERLRR ERIAERMKAL  240
QELVPNANKT DKASMLDEII DYVKFLQLQV KVLSMSRLGG ASAVAPLVAN MSSESNGNGN  300
ATSSSGNGEA ANGSSNGDNN RGGTLRVTEQ QVAKLMEEDM GSAMQYLQGK GLCLMPISLA  360
TAISSATSSS LLPRTGGGAG GSLHEGGNGT SPPLVNGAAT GCDDSGVFFS VKFVVELSFL  420
LLNEDCRGKE ESKLLVQKGP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	226	231	RLRRER

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA02G0311000.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003975	0.0	AP003975.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1004_E04.
GenBank	AP004094	0.0	AP004094.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1695_H09.
GenBank	AP014958	0.0	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015627343.1	0.0	transcription factor bHLH66
Swissprot	Q9ZUG9	1e-77	BH066_ARATH; Transcription factor bHLH66
TrEMBL	I1P554	0.0	I1P554_ORYGL; Uncharacterized protein
STRING	ORGLA02G0311000.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1419	37	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58010.1	4e-41	LJRHL1-like 3

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]