PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0295100.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 316aa    MW: 34555.9 Da    PI: 4.5468
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0295100.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57349.21.4e-15134225298
             DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfk.vsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifels 92 
                        +f+r+ws eDe+ +L +l   + ++g  +   +da++ ++ +s++ + + +++l  K+  LK++++   kk  +g+    sk hd+  ++ls
  ORGLA02G0295100.1 134 AFHRIWSTEDEVRILEALAAHRREHG--SLPQTDALIATLAGSLDNTgYGRKELQGKVSTLKRRYESTAKK--KGDL--PSKGHDRRLYDLS 219
                        699******************99999..678899**********8653899******************99..5554..5799********* PP

             DUF573  93 kkiWgs 98 
                        k++Wgs
  ORGLA02G0295100.1 220 KSVWGS 225
                        ****95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.0E-21135224IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
WPPKRPTPPP PPPPVASSEE TASGSDSDES EEEEEESPLA QPAPVVSNKG AESDSSGEEE  60
SEEEEEEDLV RSSATKSRDP PQENREEDDS SDEEEDESSE SEKAEAPPPP PLNPAPKQGA  120
EGNGPKVSSP KRQAFHRIWS TEDEVRILEA LAAHRREHGS LPQTDALIAT LAGSLDNTGY  180
GRKELQGKVS TLKRRYESTA KKKGDLPSKG HDRRLYDLSK SVWGSEAAAA AANGTTTAPR  240
EFGEMCKLYP HLAEEVKLLE AAHPGLFKRD FGKLDDDKAH ALDMKIKKQR IAEISVVLRR  300
GDLTKEVTKV LTELVE
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0295100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0668230.0AK066823.1 Oryza sativa Japonica Group cDNA clone:J013075K03, full insert sequence.
GenBankAP0040580.0AP004058.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1353_F08.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627254.11e-141probable tyrosine-protein phosphatase DSP2
TrEMBLI1P4P50.0I1P4P5_ORYGL; Uncharacterized protein
STRINGORGLA02G0295100.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67292737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66420.16e-09DNA-binding storekeeper protein-related transcriptional regulator