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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
ORGLA02G0287300.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
bHLH |
| Protein Properties |
Length: 334aa MW: 35262.9 Da PI: 6.7107 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| ORGLA02G0287300.1 | genome | AGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 43.9 | 4.4e-14 | 136 | 187 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+rr+h ++Er+RR+++N+ ++ Lr+l+P++ ++++ + a+i+ A++++k+L+
ORGLA02G0287300.1 136 QRRNHIAVERNRRRQMNEYLAVLRSLMPPS---YAQRGDQASIVAGAINFVKELE 187
79****************************...*******************995 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 334 aa
Download sequence Send
to blast |
MALEAVVFPQ EHLSCAAAMY AAPPSSLGCG VDMDEFEENG GVVLQEEAGV AVHGGGGGGA 60
GGMMSVWVNA ATCARSIAAS GAVEEFWDER QYPVSSPPAA PTPAASGGGG GHAKAAARRR 120
RRRPKVVKNK EEAESQRRNH IAVERNRRRQ MNEYLAVLRS LMPPSYAQRG DQASIVAGAI 180
NFVKELEQLL QSLEAQKRRA EHAPPAPPFA GFFTFPQYST TVGDNNAAGS GAADGEGGCG 240
ARPGAADIEV AMAESHANVR VLAPRRPRQL LRMVVALQCL GLTVLHLNVT TTADHLALYS 300
FSLKMEDECR LSSVDEIAGA VNQMVTKIAG ECIS
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 117 | 122 | RRRRRR |
| 2 | 137 | 147 | RNHIAVERNRR |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP004814 | 0.0 | AP004814.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0471A11. |
| GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012610 | 0.0 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
