PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0266600.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 351aa    MW: 38214.8 Da    PI: 4.3973
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0266600.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.51.5e-2085138356
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        k++++t+eq++ Le+ Fe+++++  e+++eLA+klgL+ rqV vWFqNrRa++k
  ORGLA02G0266600.1  85 KKRRLTPEQVHLLERSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWK 138
                        5678*************************************************9 PP
2HD-ZIP_I/II132.51.6e-4284176193
        HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                        ekkrrl+ eqv+lLE+sFeee+kLeperK+elar+LglqprqvavWFqnrRAR+ktkqlE+d+++Lk+++dal++++++L +++++L+++++
  ORGLA02G0266600.1  84 EKKRRLTPEQVHLLERSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWKTKQLERDFDRLKASFDALRADHDALLQDNHRLHSQVM 175
                        69**************************************************************************************9997 PP

        HD-ZIP_I/II  93 e 93 
                        +
  ORGLA02G0266600.1 176 S 176
                        5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.19E-2079142IPR009057Homeodomain-like
PROSITE profilePS5007118.2280140IPR001356Homeobox domain
SMARTSM003892.0E-2083144IPR001356Homeobox domain
CDDcd000861.25E-2085141No hitNo description
PfamPF000468.2E-1885138IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.3E-2286147IPR009057Homeodomain-like
PRINTSPR000312.4E-6111120IPR000047Helix-turn-helix motif
PROSITE patternPS000270115138IPR017970Homeobox, conserved site
PRINTSPR000312.4E-6120136IPR000047Helix-turn-helix motif
PfamPF021831.9E-18140182IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MESGRLIFST AGSGAGQMLF LDCGAGGAGG GGGGGVGGGA MFHRDEGARP VLGMEEGGRG  60
VKRPFFTTPD ELLEEEYYDE QLPEKKRRLT PEQVHLLERS FEEENKLEPE RKTELARKLG  120
LQPRQVAVWF QNRRARWKTK QLERDFDRLK ASFDALRADH DALLQDNHRL HSQVMSLTEK  180
LQEKETTTEG SAGAAVDVPG LPAAADVKVA VPDAEEPALE EAAAAFEEQQ EQQVKAEDRL  240
STGSGGSAVV DTDAQLVVGC GRQHLAAVDS SVESYFPGGD EYHDCVMGPM DHAAGGIQSE  300
EDDGAGSDEG CSYYADDAGV LFADHGHHHH HQHADDDEED GQQISCWWMW N
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132140RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0266600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8347000.0CT834700.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI224F24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626254.10.0homeobox-leucine zipper protein HOX16 isoform X2
SwissprotA2X9800.0HOX16_ORYSI; Homeobox-leucine zipper protein HOX16
SwissprotQ6YWR40.0HOX16_ORYSJ; Homeobox-leucine zipper protein HOX16
TrEMBLI1P3W00.0I1P3W0_ORYGL; Uncharacterized protein
STRINGORGLA02G0266600.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26093887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.13e-57homeobox 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]