PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Cis-element |

Regulation |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

ORGLA02G0255200.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LBD

Protein Properties

Length: 125aa MW: 13773.4 Da PI: 6.4832

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA02G0255200.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	50.3	6.9e-16	7	61	45	99
DUF260 45 llkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 l++l +++ +a+sslvyeA+ r+rdPvyG+vg i+ +q+q++ql+ +la++ ORGLA02G0255200.1 7 SLQELLAQQQGNAVSSLVYEANDRMRDPVYGCVGAISFMQNQVSQLQMQLAVAXG 61 6899999*******************************************98765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	9.636	1	63	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.0E-13	7	59	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 125 aa Download sequence Send to blast
MLARCSSLQE LLAQQQGNAV SSLVYEANDR MRDPVYGCVG AISFMQNQVS QLQMQLAVAX 60 GEILCIQMQH RDGNENEKNL RDLGCTFSAS CGPSRSVAGQ AERFGGLQFI MGRNHFWASI 120 WPIGI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA02G0255200.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004165	9e-97	AP004165.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1479_B12.
GenBank	AP014958	9e-97	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBank	CP012610	9e-97	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015624534.1	3e-43	LOB domain-containing protein 12
Swissprot	Q8LBW3	1e-26	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	I1P3J6	4e-86	I1P3J6_ORYGL; Uncharacterized protein
STRING	ORGLA02G0255200.1	6e-87	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP882	38	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	6e-29	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]