PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0249400.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 288aa    MW: 31390.5 Da    PI: 8.9696
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0249400.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1071e-333185155
            G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                       kprlrWtp+LHerFveav++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl
  ORGLA02G0249400.1 31 KPRLRWTPDLHERFVEAVTKLGGPDKATPKSVLRLMGMKGLTLYHLKSHLQKYRL 85
                       79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.0322888IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.7E-332886IPR009057Homeodomain-like
SuperFamilySSF466891.0E-163188IPR009057Homeodomain-like
TIGRFAMsTIGR015579.3E-253186IPR006447Myb domain, plants
PfamPF002499.0E-103384IPR001005SANT/Myb domain
PfamPF143791.1E-24130174IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MFEGMERAGY GVGVGGAGAV GAGVVLSRDP KPRLRWTPDL HERFVEAVTK LGGPDKATPK  60
SVLRLMGMKG LTLYHLKSHL QKYRLGKQNK KDTGLEASRG AFAAHGISFA SAAPPTIPSA  120
ENNNAGETPL ADALRYQIEV QRKLHEQLEV QKKLQMRIEA QGKYLQTILE KAQNNLSYDA  180
TGTANLEATR TQLTDFNLAL SGFMNNVSQV CEQNNGELAK AISEDNLRTT NLGFQLYHGI  240
QDSDDVKCSQ DEGLLLLDLN IKGGGYDHLS SNAMRGGESG LKISQHRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A4e-213187157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-213187157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-213187157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-213187157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00544DAPTransfer from AT5G45580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0249400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0594480.0AK059448.1 Oryza sativa Japonica Group cDNA clone:001-028-A10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623757.10.0myb family transcription factor PHL11
TrEMBLA0A0D3F9C20.0A0A0D3F9C2_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9YWX90.0A0A0D9YWX9_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0NJP60.0A0A0E0NJP6_ORYRU; Uncharacterized protein
TrEMBLI1P3D80.0I1P3D8_ORYGL; Uncharacterized protein
TrEMBLQ0DYD60.0Q0DYD6_ORYSJ; Os02g0700300 protein
STRINGOGLUM02G29720.10.0(Oryza glumipatula)
STRINGORUFI02G30700.10.0(Oryza rufipogon)
STRINGOS02T0700300-010.0(Oryza sativa)
STRINGORGLA02G0249400.10.0(Oryza glaberrima)
STRINGOBART02G29100.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39403470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45580.12e-64G2-like family protein