PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0246400.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 375aa    MW: 39707.7 Da    PI: 6.2828
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0246400.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH443.9e-1488139155
                        CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  A+e++k+L+
  ORGLA02G0246400.1  88 QRMTHIAVERNRRRQMNEYLAVLRSLMPEP---YVQRGDQASIVGGAIEFVKELE 139
                        79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-1778152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.94E-1486143No hitNo description
PROSITE profilePS5088815.30187138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-1188139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-1488152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-1193144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MSTLVDALCA PCSDTALIYD TFNASAAASF LFDNAAAFCD ADILGATATG EKEATSSAAA  60
AAADAAPPRK KRRRRAKSCK SREETETQRM THIAVERNRR RQMNEYLAVL RSLMPEPYVQ  120
RGDQASIVGG AIEFVKELEQ QLQSLEAQKR TLLPHHKARC DDATPMHNAS GSNVGAGGCM  180
EPTTTTSNCS SSVTEDAPSA DAPPFAQFFA YPQYVWCHSP RDSTTTTTAA SASASASASS  240
SSPATVAAAL QSEHRSGLAD IEVSLVETHA SVRVMSPRRP GQLLKMIAGL QALRLTVLHL  300
NVTTLDSLVL YTLSVKVEEG CSLTTVDDIA AAVHHVLCIV DAEAAASEHL LAAGQLTTTA  360
TAAAVAKREL ATYMY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16874RKKRRRR
26974KKRRRR
38899RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0246400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0606950.0AK060695.1 Oryza sativa Japonica Group cDNA clone:001-030-D07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623756.10.0transcription factor bHLH96
TrEMBLI1P3A80.0I1P3A8_ORYGL; Uncharacterized protein
STRINGORGLA02G0246400.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37123678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.14e-58bHLH family protein