PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0236400.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 624aa    MW: 64413.8 Da    PI: 8.5106
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0236400.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-05104126123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C+ C+k F r  nL+ H r H
  ORGLA02G0236400.1 104 FVCEVCNKGFQREQNLQLHRRGH 126
                        89*******************88 PP
2zf-C2H211.50.00092181203123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        +kC +C+k++  +s+ k H + +
  ORGLA02G0236400.1 181 WKCDKCSKRYAVQSDWKAHSKIC 203
                        58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.52E-7103126No hitNo description
Gene3DG3DSA:3.30.160.608.7E-6103126IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0041104126IPR015880Zinc finger, C2H2-like
PfamPF121714.1E-5104126IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015711.094104126IPR007087Zinc finger, C2H2
PROSITE patternPS000280106126IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.3E-4169202IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.52E-7176201No hitNo description
SMARTSM00355140181201IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    Send to blast
MASNSSAAAV AALFGIRDGD HEDQIKPLFA QQQQHHHHQP PMAPSNAAAA ASAAGSAAGQ  60
AAVAAPPAKK KRTLPAVLAC IACADPDAEV IALSPKTLLA TNRFVCEVCN KGFQREQNLQ  120
LHRRGHNLPW KLKQKNPLQA QRRRVYLCPE PTCVHHDPSR ALGDLTGIKK HFCRKHGEKK  180
WKCDKCSKRY AVQSDWKAHS KICGTREYRC DCGTLFSRRD SFITHRAFCD ALAQESARLP  240
PAAAGHLYGS AGAANMALSL SQVGSHLAST LQDHGHHHHH HGASPDLLRF GGSGGGAMAA  300
RLEHLLSSSS ASAFRPLPPP QQQPPAPFLL GAAPQGFGDG GDGSGPHGFL QGKPFHGLMQ  360
LPDLQGNGTG GPSPSGPGLY NLGYIANSAN SSGTSSHGHA SQGQMTNTDQ FSEGGGGGGG  420
GGGSETSAAA LFGAGGNFSG GDHHQVSPAG MYANDQAMML PQMSATALLQ KAAQMGSSTS  480
SANGAGASVF GGGFAGSSAP SSIPHGRGTT MVDQGQMHLQ SLMNSLAGGG NADHQGMFGS  540
GSMIDPRLYD MDQHEVKFSL QRGGGGGGDG DVTRDFLGVG GGGFMRGMSM ARGEHHGGGG  600
SDMHGTLEAE MKSASSSFNG GRMQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-34177239365Zinc finger protein JACKDAW
5b3h_F4e-34177239365Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0236400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1206030.0AK120603.1 Oryza sativa Japonica Group cDNA clone:J013149P10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626115.10.0protein indeterminate-domain 4, chloroplastic
RefseqXP_015626116.10.0protein indeterminate-domain 4, chloroplastic
RefseqXP_015626117.10.0protein indeterminate-domain 4, chloroplastic
RefseqXP_015626118.10.0protein indeterminate-domain 4, chloroplastic
TrEMBLI1P3080.0I1P308_ORYGL; Uncharacterized protein
STRINGORGLA02G0236400.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17333798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.11e-102indeterminate(ID)-domain 12