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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA02G0231500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRAS | ||||||||
Protein Properties | Length: 709aa MW: 74300.2 Da PI: 5.9009 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 272.3 | 1.5e-83 | 351 | 708 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 + L ++A+a ++g+ a+++Larl+++ + g+p+ R a+y++eAL la+ s+ ++ +s+ +++ +laa+k fs++sP+l+f+ ORGLA02G0231500.1 351 DELAAAAKATEAGNSVGAREILARLNQQLPQLGKPFLRSASYLKEALLLALAD--SHHGSSGVTSPL---DVALKLAAYKSFSDLSPVLQFT 437 7899*************************************************..444444555555...499******************* PP GRAS 95 hltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180 ++ta qa+l+++ g +++H+iDfd++ G+QW+++lq+La R+ p l++T++ s +s++ el+ t+++L++fA+el++pfefn+ ORGLA02G0231500.1 438 NFTATQALLDEIGGMatSCIHVIDFDLGVGGQWASFLQELAHRRgaggMALPLLKLTAFISTASHHPLELHLTQDNLSQFAAELRIPFEFNA 529 *************998899************************966444489*********9*9**************************** PP GRAS 181 lvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271 + +l+++++ eL ++ +E++aV+l + + +++L+lvk+l Pkvvv +++ d+ + +F ++fl++++ ++ l+dsl ORGLA02G0231500.1 530 V---SLDAFNPVELISSSgDEVVAVSLPVGCSARA---PP----LPAILRLVKQLCPKVVVAIDHGGDRADLPFSQHFLNCFQSCVFLLDSL 611 8...889998888866666*********9777665...44....556********************************************* PP GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363 +a + +++ + k+Er+l++++++++v ++++ +++ Wr+ + + GFkpv+ s+ a++qa++ll++v+++g++ve++ ++l+l+W+ ORGLA02G0231500.1 612 DAA-GIDADSACKIERFLIQPRVEDAVIGRHKA-----QKAIAWRSVFAATGFKPVQPSNLAEAQADCLLKRVQVRGFHVEKRGAALTLYWQ 697 888.7899*******************999888.....78899************************************************* PP GRAS 364 drpLvsvSaWr 374 + +Lvs+S+Wr ORGLA02G0231500.1 698 RGELVSISSWR 708 **********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 41.11 | 323 | 688 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.2E-81 | 351 | 708 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0048768 | Biological Process | root hair cell tip growth | ||||
GO:0051301 | Biological Process | cell division |
Sequence ? help Back to Top |
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Protein Sequence Length: 709 aa Download sequence Send to blast |
MRAALFGAER SGVVDHGGGD KEELFWPAGK GGLVVVEPRS VLDCTRSPSP PYSTSTLSSS 60 LGGGSADSTG VAAVSESSTA AAGATKWGAP GEHGGGGKEE WGGGCELPPI PGALDVGLVE 120 GEGWDATATL GNAAGPDQSF LNWIIGAGGD LEQPGPPLPV LQQPLIDNAG FGIPAVDTMG 180 FSLDHPLSGV ASDLSSSGAH TATGGGGKAS LGFGLFSPEA TSLEQPPPSM LFHEGIDTKP 240 PLLGAQPQFL LNHYQPQPPN PAAALFMPLP PFPEHNHQSP HLQPPLKRHH AIPDDLYLAR 300 NQQQSSAVAP GLAYSPPLHG PAPFQLHPSP PPIRGAMKST AAEAAQQQLL DELAAAAKAT 360 EAGNSVGARE ILARLNQQLP QLGKPFLRSA SYLKEALLLA LADSHHGSSG VTSPLDVALK 420 LAAYKSFSDL SPVLQFTNFT ATQALLDEIG GMATSCIHVI DFDLGVGGQW ASFLQELAHR 480 RGAGGMALPL LKLTAFISTA SHHPLELHLT QDNLSQFAAE LRIPFEFNAV SLDAFNPVEL 540 ISSSGDEVVA VSLPVGCSAR APPLPAILRL VKQLCPKVVV AIDHGGDRAD LPFSQHFLNC 600 FQSCVFLLDS LDAAGIDADS ACKIERFLIQ PRVEDAVIGR HKAQKAIAWR SVFAATGFKP 660 VQPSNLAEAQ ADCLLKRVQV RGFHVEKRGA ALTLYWQRGE LVSISSWRC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 6e-23 | 349 | 708 | 4 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 95 | 103 | GGKEEWGGG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA02G0231500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004037 | 0.0 | AP004037.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1001_D02. | |||
GenBank | AP004883 | 0.0 | AP004883.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0516F12. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015627415.1 | 0.0 | scarecrow-like protein 6 | ||||
TrEMBL | I1P2V9 | 0.0 | I1P2V9_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA02G0231500.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2020 | 37 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00150.1 | 8e-94 | GRAS family protein |