PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0213400.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 258aa    MW: 28468.8 Da    PI: 6.3123
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0213400.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.27e-171461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       rg+WT+eEd +lv  ++++G  +W++ +r  g+ R++k+c++rw +yl
  ORGLA02G0213400.1 14 RGPWTAEEDRILVAHIERHGHSNWRALPRQAGLLRCGKSCRLRWINYL 61
                       89******************************99************97 PP
2Myb_DNA-binding49.41.1e-1567112148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rg++T eE++ +++++ +lG++ W++Ia++++ gRt++++k+ w+++l
  ORGLA02G0213400.1  67 RGNFTREEEDAIIHLHDLLGNR-WSAIAARLP-GRTDNEIKNVWHTHL 112
                        89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.2E-25564IPR009057Homeodomain-like
PROSITE profilePS5129415.902961IPR017930Myb domain
SuperFamilySSF466892.64E-3010108IPR009057Homeodomain-like
SMARTSM007171.8E-131363IPR001005SANT/Myb domain
PfamPF002492.2E-141461IPR001005SANT/Myb domain
CDDcd001677.04E-111661No hitNo description
PROSITE profilePS5129425.75862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.3E-2665116IPR009057Homeodomain-like
SMARTSM007175.1E-1466114IPR001005SANT/Myb domain
PfamPF002491.7E-1467112IPR001005SANT/Myb domain
CDDcd001672.38E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MGRAPCCEKM GLKRGPWTAE EDRILVAHIE RHGHSNWRAL PRQAGLLRCG KSCRLRWINY  60
LRPDIKRGNF TREEEDAIIH LHDLLGNRWS AIAARLPGRT DNEIKNVWHT HLKKRLEPKP  120
SSGREAAAPK RKATKKAAAV AVAIDVPTTV PVSPEQSLST TTTSAATTEE YSYSMASSAD  180
HNTTDSFTSE EEFQIDDSFW SETLAMTVDS TDSGMEMSGG DPLGAGGASP SSSNDDDMDD  240
FWLKLFIQAG GMQNLPQI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25121175109B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of cold tolerance. Negatively regulates beta-amylase genes at the transcriptional level in response to cold stress. Suppresses beta-amylase gene expression by interacting with TIFY11A/JAZ9. Maltose produced by beta-amylases has a role in protecting cell membranes under cold stress conditions in rice and may contribute to the cold tolerance as a compatible solute. {ECO:0000269|PubMed:28062835}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00375DAPTransfer from AT3G23250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0213400.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by cold stress and flooding. {ECO:0000269|PubMed:28062835}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1120560.0AK112056.1 Oryza sativa Japonica Group cDNA clone:001-110-C03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623124.10.0transcription factor MYB30-like
SwissprotQ6K1S60.0MYB30_ORYSJ; Transcription factor MYB30
TrEMBLA0A0E0NHZ20.0A0A0E0NHZ2_ORYRU; Uncharacterized protein
TrEMBLA2X7E40.0A2X7E4_ORYSI; Uncharacterized protein
TrEMBLI1P2C80.0I1P2C8_ORYGL; Uncharacterized protein
STRINGORUFI02G25970.10.0(Oryza rufipogon)
STRINGOS02T0624300-010.0(Oryza sativa)
STRINGORGLA02G0213400.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.13e-77myb domain protein 15
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  3. Lv Y, et al.
    The OsMYB30 Transcription Factor Suppresses Cold Tolerance by Interacting with a JAZ Protein and Suppressing β-Amylase Expression.
    Plant Physiol., 2017. 173(2): p. 1475-1491
    [PMID:28062835]