PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0180000.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 516aa    MW: 54061.5 Da    PI: 5.2998
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0180000.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.52.1e-12325370555
                        HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        h+++Er RR++i +++  L+el+P++      K +Ka++L + ++Y+k Lq
  ORGLA02G0180000.1 325 HSIAERLRREKISDRMKDLQELVPNS-----NKTNKASMLDEIIDYVKFLQ 370
                        99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.98E-13318374No hitNo description
SuperFamilySSF474593.79E-17318381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.06320369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-17322380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-9325370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-13326375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MGGFAYPFTP SPAWSRDAVF AGSPWAAGGV SSLADALVSY GAVDDEEAAF LGKTAASSPS  60
TARLHEQQQL LLEAELLRHG DGLGFAAMDD DGGAAMLGAL EPCAMPLTDS GGPPVICSSS  120
SNDSSGSEHS AAMPAGGGFL VGEQQQHVPP AAYAAGGVLP SMAAGEETPQ SFGFGSLFNG  180
DLLQEANVSK YHHHQQQQQL GVVPSSQPHH LNDDIDFNTG KLLSFASGQQ HVTPSIDSLQ  240
IDQKEFSSGL HHLNLSSLIS GPLASFNATQ SHRQPAEACG GKHGCAAPFV NLSEVLPKGN  300
GSGSAGNGAP KPRVRARRGQ ATDPHSIAER LRREKISDRM KDLQELVPNS NKTNKASMLD  360
EIIDYVKFLQ LQVKVLSMSR LGAAEAVVPL LTETQTESPG LLLSPRSSSG ERQAGAVTGG  420
LPGDQPELLD GGAMFEQEVV KLMEDNMTAA MQYLQSKGLC LMPVALASAI SAQKGTSSAA  480
VRPEKKNGGD EEDVKGEFDA PRRPPVGRPK EMRSRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0180000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2419240.0AK241924.1 Oryza sativa Japonica Group cDNA, clone: J075076G04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623831.10.0transcription factor bHLH68
TrEMBLI1P1E40.0I1P1E4_ORYGL; Uncharacterized protein
STRINGORGLA02G0180000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32543879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.14e-54LJRHL1-like 3