PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0175400.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 204aa    MW: 22816.5 Da    PI: 6.7308
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0175400.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM104.21.7e-3271241128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGf+F P+deel+v++L++kv+  +++  ++i+++  ++++Pw+L+ k+ +  ++wyfF++  +        +r+ ++g W+  g d++v
  ORGLA02G0175400.1   7 LPPGFHFFPSDEELIVHFLRRKVSLLPCHP-DIIPTLLPHRYNPWELNGKALQAGNQWYFFCHLTQ--------SRTSSNGHWSPIGVDETV 89 
                        79*************************999.89**************966667789******9855........577789************ PP

                NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         s +g++vglkktL f  g+ ++g +t+W+mhey+l
  ORGLA02G0175400.1  90 RS-GGRNVGLKKTLLFSIGEPSEGIRTNWIMHEYHL 124
                        *9.99*****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.81E-454167IPR003441NAC domain
PROSITE profilePS5100540.4647168IPR003441NAC domain
PfamPF023652.4E-208124IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MGGATNLPPG FHFFPSDEEL IVHFLRRKVS LLPCHPDIIP TLLPHRYNPW ELNGKALQAG  60
NQWYFFCHLT QSRTSSNGHW SPIGVDETVR SGGRNVGLKK TLLFSIGEPS EGIRTNWIMH  120
EYHLLDGDCV AGGSSNLTSS SSNRRSHRKR GHSSMESNNW VLCRVFESSC GSQVSFHGEG  180
TELSCLDEVF LSLDDYDEVS LPNK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A6e-33617319173NAC domain-containing protein 19
3swm_B6e-33617319173NAC domain-containing protein 19
3swm_C6e-33617319173NAC domain-containing protein 19
3swm_D6e-33617319173NAC domain-containing protein 19
3swp_A6e-33617319173NAC domain-containing protein 19
3swp_B6e-33617319173NAC domain-containing protein 19
3swp_C6e-33617319173NAC domain-containing protein 19
3swp_D6e-33617319173NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0175400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8313770.0CT831377.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRN119H17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626053.11e-150NAC domain-containing protein 104
SwissprotQ8GWK62e-61NC104_ARATH; NAC domain-containing protein 104
TrEMBLI1P1981e-149I1P198_ORYGL; Uncharacterized protein
STRINGORGLA02G0175400.11e-150(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36673679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.15e-62xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]