PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA02G0156500.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Trihelix

Protein Properties

Length: 386aa MW: 42887.3 Da PI: 4.5772

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA02G0156500.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	60.1	5.3e-19	82	132	28	78
trihelix 28 kplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessst 78 +p+W++v++++r++g+er+++qC+++w+nl+++ykkike+e++ +s+sss+ ORGLA02G0156500.1 82 EPKWAAVAEYCRRHGVERGAVQCRKRWSNLAGDYKKIKEWERSLSSPSSSS 132 79*****************************************98887764 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	5.9E-9	84	124	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence Send to blast
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 60 XXXXXXXXXX XXXXXXXXXX LEPKWAAVAE YCRRHGVERG AVQCRKRWSN LAGDYKKIKE 120 WERSLSSPSS SSSAAGMGKE VSFWAMRNDA RRERRLPGFF DREVYDILDG RGRGTLVAPS 180 GGGNAAAGEE EPARAAAEVE VEVEEEEETG KTRARAEETV FDSGRPAAEE SLFSDDEEED 240 DDDEAPPATA AAVAATAQAP PRAVIALPIS GTSKDKQPEQ QAASRGTPPP PPPTTQQQQQ 300 QQQQGGQKRR RADDDDEEED DGRRGGELQS KLVEILDRSS RMVAAQLEAQ NANSRLDREQ 360 RRDQAASLAV VLGRLADALG RIADKL

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence Send to blast

XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  60
XXXXXXXXXX XXXXXXXXXX LEPKWAAVAE YCRRHGVERG AVQCRKRWSN LAGDYKKIKE  120
WERSLSSPSS SSSAAGMGKE VSFWAMRNDA RRERRLPGFF DREVYDILDG RGRGTLVAPS  180
GGGNAAAGEE EPARAAAEVE VEVEEEEETG KTRARAEETV FDSGRPAAEE SLFSDDEEED  240
DDDEAPPATA AAVAATAQAP PRAVIALPIS GTSKDKQPEQ QAASRGTPPP PPPTTQQQQQ  300
QQQQGGQKRR RADDDDEEED DGRRGGELQS KLVEILDRSS RMVAAQLEAQ NANSRLDREQ  360
RRDQAASLAV VLGRLADALG RIADKL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA02G0156500.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT835475	0.0	CT835475.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN038B06, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015623609.1	1e-114	trihelix transcription factor ASR3
TrEMBL	I1P0Q9	0.0	I1P0Q9_ORYGL; Uncharacterized protein
STRING	ORGLA02G0156500.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3915	26	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	1e-36	Trihelix family protein