PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C3H

Protein Properties

Length: 326aa MW: 35700.4 Da PI: 7.1876

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA02G0118200.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.2	2.4e-12	188	213	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y +C+++ +tG+C yGd+CkF+H+ ORGLA02G0118200.1 188 YQPDICKDYKETGYCGYGDSCKFMHD 213 67789********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	1.96E-9	186	218	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.878	187	215	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.1E-7	187	214	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.4E-10	188	213	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.6E-12	188	218	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:3.30.40.10	6.1E-14	260	306	IPR013083	Zinc finger, RING/FYVE/PHD-type
Pfam	PF13920	2.1E-8	264	305	No hit	No description
SuperFamily	SSF57850	1.58E-13	264	307	No hit	No description
PROSITE profile	PS50089	10.734	265	303	IPR001841	Zinc finger, RING-type
SMART	SM00184	9.1E-5	265	302	IPR001841	Zinc finger, RING-type
CDD	cd00162	1.92E-7	265	306	No hit	No description
PROSITE pattern	PS00518	0	280	289	IPR017907	Zinc finger, RING-type, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MADGGGGGEA GSGGSAPVCS FVRKPPKNIR KRPTAPAGSD DDDEDGSGAI AAARAKKAPS 60 STSKLFFSSA DGSSEPRRFQ YESSRTIQAS TDSRATATLE TETEFDRDAR AIRERQLKQA 120 EESLKKNPSA PASGSGSGSG EVYKGIHGYT DYKAGFRREH TVSSEKAGGS HGPLRASAHI 180 RLSARFDYQP DICKDYKETG YCGYGDSCKF MHDRGDYKSG WQIEKEWEEA EKARKRRIAM 240 GGDGSDDEAG EEDDDDDEEA LPFACYICRE PFVDPVVTKC KHYFCEHCAL KHHSKNKKCF 300 VCNKPTLGIF NAAQEIRKKM AQDKKQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5z56_M	5e-62	81	320	100	317	RING finger protein 113A
5z58_M	5e-62	81	320	100	317	RING finger protein 113A
6ff4_t	5e-62	81	320	100	317	RING finger protein 113A
6ff7_t	5e-62	81	320	100	317	RING finger protein 113A
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA02G0118200.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT831567	0.0	CT831567.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA018I20, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015622931.1	0.0	zinc finger CCCH domain-containing protein 15
Swissprot	Q6K4V3	0.0	C3H15_ORYSJ; Zinc finger CCCH domain-containing protein 15
TrEMBL	A0A0D3F412	0.0	A0A0D3F412_9ORYZ; Uncharacterized protein
TrEMBL	B8AFX5	0.0	B8AFX5_ORYSI; Uncharacterized protein
TrEMBL	I1NZM6	0.0	I1NZM6_ORYGL; Uncharacterized protein
STRING	ORGLA02G0118200.1	0.0	(Oryza glaberrima)
STRING	OBART02G13420.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8071	36	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01350.1	1e-120	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]