PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA02G0113900.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GeBP

Protein Properties

Length: 576aa MW: 61242.9 Da PI: 6.3808

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA02G0113900.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	42.9	1.3e-13	198	287	7	98
DUF573 7 wseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsk.sqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 w+ +De+ +L l+ +++g++ ++++++ v +s++ k k s++ eK+rrLK++++ kk+++g + +ke+d +++ls+ iWg ORGLA02G0113900.1 198 WTTDDEVKILEVLVAHFKSHGTQ--LNVEGIIAAVGDSLERKSIKySDMYEKVRRLKQRYEATAKKVEHGGDLP-AKEDDLRMYQLSSEIWG 286 ************999999954..699*******98865538*******************9965.567889********9 PP DUF573 98 s 98 + ORGLA02G0113900.1 287 K 287 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	3.1E-19	198	286	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 576 aa Download sequence Send to blast
MARKRRAPTP PPPPPPPPEA ESSADSSGEE EEEEEERESP VAPPPQKPSG RGAASSDEEE 60 EEEDSDTDTY AQGFQLRKVG GGDEEGEEVE GDSSESEPEP EPVKKESAKK AKAEAKKKRA 120 APEPAPSGKA KKAKPEKSSS AAAPEPAPSS GKSKKAAKAE AAKAAAAEPA PSTGKVSKSK 180 LAPEPSPSSK SGKALSRWTT DDEVKILEVL VAHFKSHGTQ LNVEGIIAAV GDSLERKSIK 240 YSDMYEKVRR LKQRYEATAK KVEHGGDLPA KEDDLRMYQL SSEIWGKNAK DAGNSSKNKK 300 GQAKKDKVSG DSKEAAKEDK VDEAAIAVNE KGGTLAENKK GKTNKQKTGM ETKVGLSKEA 360 ALAASPTKGK KKGSHKDKLD EEAKSGTAKV TSTIATDDDD DDDGTLGGSK REKAGKEELD 420 GDTHIVMPKE ATTTAARDDG TLVGSKKGKA DNGKLDGDTH SVMPKEATAG TQNGGILTGG 480 ENHKEKVDKD ANVPSIRREY AELQSLYPNL ASFVNGIEAQ HPCGSTFKRA FEFISDDKAC 540 TLESKIKKQK IAEVRMQLRL ADTKKEVANA LLGLLD

Sequence ? help Back to Top

Protein Sequence Length: 576 aa Download sequence Send to blast

MARKRRAPTP PPPPPPPPEA ESSADSSGEE EEEEEERESP VAPPPQKPSG RGAASSDEEE  60
EEEDSDTDTY AQGFQLRKVG GGDEEGEEVE GDSSESEPEP EPVKKESAKK AKAEAKKKRA  120
APEPAPSGKA KKAKPEKSSS AAAPEPAPSS GKSKKAAKAE AAKAAAAEPA PSTGKVSKSK  180
LAPEPSPSSK SGKALSRWTT DDEVKILEVL VAHFKSHGTQ LNVEGIIAAV GDSLERKSIK  240
YSDMYEKVRR LKQRYEATAK KVEHGGDLPA KEDDLRMYQL SSEIWGKNAK DAGNSSKNKK  300
GQAKKDKVSG DSKEAAKEDK VDEAAIAVNE KGGTLAENKK GKTNKQKTGM ETKVGLSKEA  360
ALAASPTKGK KKGSHKDKLD EEAKSGTAKV TSTIATDDDD DDDGTLGGSK REKAGKEELD  420
GDTHIVMPKE ATTTAARDDG TLVGSKKGKA DNGKLDGDTH SVMPKEATAG TQNGGILTGG  480
ENHKEKVDKD ANVPSIRREY AELQSLYPNL ASFVNGIEAQ HPCGSTFKRA FEFISDDKAC  540
TLESKIKKQK IAEVRMQLRL ADTKKEVANA LLGLLD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA02G0113900.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004168	0.0	AP004168.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1756_H07.
GenBank	AP014958	0.0	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015626761.1	0.0	neurofilament medium polypeptide
TrEMBL	I1NZI3	0.0	I1NZI3_ORYGL; Uncharacterized protein
STRING	ORGLA02G0113900.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7289	27	37