PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0112600.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 501aa    MW: 56492.4 Da    PI: 3.8774
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0112600.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM50.56.8e-16101431127
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevd...iykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknr.atksgyWkat 86 
                        l pGf+F+P+d+ lv  +L + + + +l++    + e d    + + Pw L  ++ +++e+e yf ++       g r+ r ++  g W ++
  ORGLA02G0112600.1  10 LSPGFKFNPSDQMLVELFLLPYLIDGELPVRGLvLVEDDhlgGLPLPPWILLdRHGRGDEDEAYFVAPMGA--GDGARQVRsVAGGGKWVKQ 99 
                        579***********************988866544444422246679****73444445558888887765..56889999788899**977 PP

                NAM  87 gk..dkevlsk..kgelvglkktLvfykgrapkgektdWvmheyr 127
                         +  + ev+++  +++  + k +L f++ ++++g +t Wvmhey 
  ORGLA02G0112600.1 100 RSegKGEVVVApgGEAFLWEKFSLNFHRDDRRSG-STGWVMHEYI 143
                        65223344444455566999*******8777776.9********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-263150IPR003441NAC domain
PROSITE profilePS5100522.80110164IPR003441NAC domain
PfamPF023655.8E-1212143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MAAAARSQGL SPGFKFNPSD QMLVELFLLP YLIDGELPVR GLVLVEDDHL GGLPLPPWIL  60
LDRHGRGDED EAYFVAPMGA GDGARQVRSV AGGGKWVKQR SEGKGEVVVA PGGEAFLWEK  120
FSLNFHRDDR RSGSTGWVMH EYIVSPPAGS AVAASHRATH IAFTGHGQNR KRVPDGYVLV  180
LDDAVPAAAA AAAPPPESEQ SNQEEQEYAA YTDQIQQQCF VPEQQMSNQE YFPEAAAEQS  240
NQQFFVPAEE QSSHQLFLPA EEQSNQQFFM PAEEQSSHQF LPAEEQSSHQ FLPAEEQSNY  300
QQFLPALEQM TQSNQEFAYG EQSQCYIVPE QQQLSNQEYA YSEQSQCYIL PEQQQLSDQE  360
YAYSEQSQCY ILPEQQELSN QEAEYAFVCY DEQQQQQQQS KQEAEYAFAC YDEQQQQQQY  420
LHGDLTSWQE PLVTSSSSSS QQFLGQEQLL PDGLLLDGFG EISQQQGDQE YAYCEESQCY  480
TMPEQQQQSN QEAEFAFACY D
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0112600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040010.0AP004001.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1115_D03.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLI1NZH00.0I1NZH0_ORYGL; Uncharacterized protein
STRINGORGLA02G0112600.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143261123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.26e-09NAC domain containing protein 47