PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA02G0108300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | CPP | ||||||||
Protein Properties | Length: 497aa MW: 55137.3 Da PI: 8.2742 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 42.9 | 9.7e-14 | 59 | 97 | 2 | 41 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 ++k+CnCk+s+Clk+YCeCfaa+++C+ C+C+ C Nk e ORGLA02G0108300.1 59 KRKHCNCKNSRCLKLYCECFAARVYCDG-CHCSPCGNKIE 97 789*************************.********976 PP | |||||||
2 | TCR | 50.5 | 4.2e-16 | 143 | 182 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+C+ks+ClkkYCeCf+a+ Cs++C+C+dCkN e ORGLA02G0108300.1 143 KHNKGCHCRKSECLKKYCECFQANILCSKNCRCQDCKNFE 182 589***********************************65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 1.3E-13 | 58 | 98 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 35.618 | 59 | 183 | IPR005172 | CRC domain |
Pfam | PF03638 | 1.0E-10 | 61 | 95 | IPR005172 | CRC domain |
SMART | SM01114 | 7.6E-18 | 143 | 184 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 2.6E-12 | 146 | 181 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 497 aa Download sequence Send to blast |
MPPVRSAPVA PPPPPPPPQQ KKPAVPVSRP WPMSFTPHPP PPPPPPKPAV EVKNASPKKR 60 KHCNCKNSRC LKLYCECFAA RVYCDGCHCS PCGNKIENEN IRKEAIETIL LRNPLAFQPK 120 IENSPNTVTV RKDNSEAIPP IPKHNKGCHC RKSECLKKYC ECFQANILCS KNCRCQDCKN 180 FEGSEERKAL VQMKNASDRN HIQEAANFAL NGATGSLGYK SSPVRRKKYQ ENSLGEQILS 240 EAQFQPTDHA DVSQLASSCT GFGGDIASNY QSKSSEMIYR SPLANTIPLI EVNDLVKNAL 300 VACRKAPEAF LTKAGNKVEM QAEKQYQTND EINNDKTKEQ NLKEASLKDI QNKACIDRQN 360 INGTEPHLAN SFKDSRPASP GTQALMCDEM DTTFGNEDYR SPFVVPSRDQ DISELNADQE 420 RIVLTGLRDY LRVLITRGNI NATKFSLETA MELDSRRHHG ATTVFSQDKS MSSSCPETLG 480 NNQTSMSNDE QKEKSGG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 4e-26 | 51 | 193 | 2 | 133 | Protein lin-54 homolog |
5fd3_B | 4e-26 | 51 | 193 | 2 | 133 | Protein lin-54 homolog |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA02G0108300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004771 | 0.0 | AP004771.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0413A11. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015623618.1 | 0.0 | protein tesmin/TSO1-like CXC 5 | ||||
TrEMBL | I1NZC7 | 0.0 | I1NZC7_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA02G0108300.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5755 | 26 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29000.1 | 1e-84 | Tesmin/TSO1-like CXC domain-containing protein |