PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0086900.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 196aa    MW: 20790.3 Da    PI: 10.8511
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0086900.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.53.6e-062093655
                       HHHHHHHHHHHHHHHHHHHCTSCCC...........................TTS-STCHHHHHHHHHHHHHHH CS
                HLH  6 nerErrRRdriNsafeeLrellPkas........................kapskKlsKaeiLekAveYIksLq 55
                       +  Er RR+++N+ ++ L +l+ +a+                        ++ +   +  + L  A eYI++ q
  ORGLA02G0086900.1 20 KTTERIRREQMNKLYSHLDSLVRSAPpavnsipshsnsnskyhqrklrilGGAAAATTRPDRLGVAAEYIRQTQ 93
                       568*********************66699999999999999999999997667777888888888888888866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.3E-62046IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-520106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.3E-674106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MEIPPPSAGG GGGGGKPDRK TTERIRREQM NKLYSHLDSL VRSAPPAVNS IPSHSNSNSK  60
YHQRKLRILG GAAAATTRPD RLGVAAEYIR QTQERVDMLR EKKRELTGGG GGSSSSSGAG  120
AATAAAPEVE VQHLGSGLHA ILFTGAPPTD GASFHRAVRA VEDAGGQVQN AHFSVAGAKA  180
VYTIHAMVNW RWIWRH
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0086900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0057560.0AP005756.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0035N08.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015688523.13e-58PREDICTED: uncharacterized protein LOC107303503
TrEMBLI1NYR31e-140I1NYR3_ORYGL; Uncharacterized protein
STRINGORGLA02G0086900.11e-141(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119872938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.12e-12bHLH family protein