 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
ORGLA02G0080400.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
NAC |
| Protein Properties |
Length: 253aa MW: 28402.9 Da PI: 5.0944 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| ORGLA02G0080400.1 | genome | AGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 120.2 | 1.9e-37 | 12 | 144 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91
+ppGfrF+Ptde+lvv+yL+++++++++ + i+++d+y+v+Pw+Lp +++++++++ yfF+ ++++ +++r+t sg+Wk tg++k+
ORGLA02G0080400.1 12 MPPGFRFQPTDEQLVVDYLQRRTAAQPCVT-PDITDIDVYNVDPWQLPaMAMYGSDHDRYFFTMAAREV----QTRRTTPSGFWKPTGTKKT 98
79*************************988.55***************778888999*******99976....6899*************** PP
NAM 92 vlsk...kgelvglkktLvfy......kgrapkgektdWvmheyrl 128
+++ ++ + +k+ +vfy +g++++ +kt+W+mheyrl
ORGLA02G0080400.1 99 IFVVageHEVPTAVKRRFVFYlghhqpSGSNNNNNKTSWIMHEYRL 144
*99865555569*********98888778999999*********98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 253 aa
Download sequence Send
to blast |
MAMTPQLAFS RMPPGFRFQP TDEQLVVDYL QRRTAAQPCV TPDITDIDVY NVDPWQLPAM 60
AMYGSDHDRY FFTMAAREVQ TRRTTPSGFW KPTGTKKTIF VVAGEHEVPT AVKRRFVFYL 120
GHHQPSGSNN NNNKTSWIMH EYRLMNSPRA AVPLSSSVNR LPTDDLTEEM VLCRISNKDL 180
PKPPFIHNGL LQFSSVGLNG DGYNYLILDH LEPPAMEYPN VGIGNVDDAA AGTDDPGDLD 240
EEIDDSMQRN HGG
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 1e-27 | 12 | 178 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 1e-27 | 12 | 178 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 1e-27 | 12 | 178 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 1e-27 | 12 | 178 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 1e-27 | 12 | 178 | 20 | 168 | NAC domain-containing protein 19 |
| 3swm_B | 1e-27 | 12 | 178 | 20 | 168 | NAC domain-containing protein 19 |
| 3swm_C | 1e-27 | 12 | 178 | 20 | 168 | NAC domain-containing protein 19 |
| 3swm_D | 1e-27 | 12 | 178 | 20 | 168 | NAC domain-containing protein 19 |
| 3swp_A | 1e-27 | 12 | 178 | 20 | 168 | NAC domain-containing protein 19 |
| 3swp_B | 1e-27 | 12 | 178 | 20 | 168 | NAC domain-containing protein 19 |
| 3swp_C | 1e-27 | 12 | 178 | 20 | 168 | NAC domain-containing protein 19 |
| 3swp_D | 1e-27 | 12 | 178 | 20 | 168 | NAC domain-containing protein 19 |
| 4dul_A | 1e-27 | 12 | 178 | 17 | 165 | NAC domain-containing protein 19 |
| 4dul_B | 1e-27 | 12 | 178 | 17 | 165 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AK107283 | 0.0 | AK107283.1 Oryza sativa Japonica Group cDNA clone:002-126-B03, full insert sequence. |
| GenBank | EF122479 | 0.0 | EF122479.1 Oryza sativa (japonica cultivar-group) clone KCS348H05 NAC6 mRNA, complete cds. |
