PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0069300.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 421aa    MW: 44044.6 Da    PI: 5.7611
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0069300.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS280.45.2e-86414183374
               GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                         l+l+cA+ v+ gdl  a+++ + +   a p+g++  Rla++f++AL a   +           +  +   ++ + aa+ ++ ++ P+l+f+
  ORGLA02G0069300.1  41 GLVLACADLVHRGDLDGARRVAEAVLAAADPRGEAGDRLAHHFARALLALRGG----------GKGGHGGGVVPSSAAYLAYIKIAPFLRFA 122
                        5789*******************************************886666..........222233335666678999*********** PP

               GRAS  95 hltaNqaIleavege.......ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvp 175
                        hltaNqaIlea++ +       + +Hi+D+d+ +G+QWp+Llqa+a+R+    ++pp++R+Tg g     +++ l +tg+rL+ f ++l++p
  ORGLA02G0069300.1 123 HLTANQAILEAAAAAdaggahrRVLHIVDLDAAHGVQWPPLLQAIADRAdpavGPPPEVRLTGAGT----DRDVLLRTGDRLRAFSSSLNLP 210
                        ***********99887777784455************************88888899*********....********************** PP

               GRAS 176 fefnvl...vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse........sFler 256
                        f+f++l    + +l++  + +L+++p+E+laVn+vl lh+l   +++l+     +L+ vks++P vv+++e+e  +++         ++ +r
  ORGLA02G0069300.1 211 FRFHPLilpCTAELAADPTAALELHPDETLAVNCVLFLHKLG-GDGELAA----FLRWVKSMNPAVVTIAEREGVLGGDvdddnvpdELPRR 297
                        ******554445666668899********************8.5666666....*******************888655577788999**** PP

               GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sd 347
                        ++ a++yys++fd+lea++p++s +r  vE+e+l+rei  +va+ ga    r + +  W ++ ++aG+ p pls +aa+qa+lllr ++ s+
  ORGLA02G0069300.1 298 VAAAMDYYSSVFDALEATVPPASADRLAVEQEILSREIDAAVAAPGAGGGGRSRDFDAWASAARAAGLAPRPLSAFAASQARLLLRLHYpSE 389
                        ******************************************************************************************** PP

               GRAS 348 gyrveee..sgslvlgWkdrpLvsvSaWr 374
                        gy+ +++  +g+ +l W++rpL+svS+W+
  ORGLA02G0069300.1 390 GYKADDDggRGACFLRWQQRPLMSVSSWQ 418
                        *****996667788**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098549.69713395IPR005202Transcription factor GRAS
PfamPF035141.8E-8341418IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MLGSSSARDR GGGDDAEASE QPQPQPQPPL SPRAGGGEAR GLVLACADLV HRGDLDGARR  60
VAEAVLAAAD PRGEAGDRLA HHFARALLAL RGGGKGGHGG GVVPSSAAYL AYIKIAPFLR  120
FAHLTANQAI LEAAAAADAG GAHRRVLHIV DLDAAHGVQW PPLLQAIADR ADPAVGPPPE  180
VRLTGAGTDR DVLLRTGDRL RAFSSSLNLP FRFHPLILPC TAELAADPTA ALELHPDETL  240
AVNCVLFLHK LGGDGELAAF LRWVKSMNPA VVTIAEREGV LGGDVDDDNV PDELPRRVAA  300
AMDYYSSVFD ALEATVPPAS ADRLAVEQEI LSREIDAAVA APGAGGGGRS RDFDAWASAA  360
RAAGLAPRPL SAFAASQARL LLRLHYPSEG YKADDDGGRG ACFLRWQQRP LMSVSSWQPQ  420
P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-464642026381Protein SCARECROW
5b3h_A2e-464642025380Protein SCARECROW
5b3h_D2e-464642025380Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
192100GGKGGHGGG
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription regulator that controls rice tillering by initiating axillary buds and promoting their outgrowth. Rice tiller is a specialized grain-bearing branch that is formed on the unelongated basal internode and grows independently of the mother stem (culm) by means of its own adventitious roots. {ECO:0000269|PubMed:12687001}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0069300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0041910.0AP004191.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1524_D08.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624347.20.0protein MONOCULM 1-like
RefseqXP_025879052.10.0protein MONOCULM 1-like
SwissprotQ84MM91e-131MOC_ORYSJ; Protein MONOCULM 1
TrEMBLI1NY870.0I1NY87_ORYGL; Uncharacterized protein
STRINGORGLA02G0069300.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36533479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.12e-64GRAS family protein
Publications ? help Back to Top
  1. Li X, et al.
    Control of tillering in rice.
    Nature, 2003. 422(6932): p. 618-21
    [PMID:12687001]
  2. Sun F, et al.
    Identification and functional analysis of the MOC1 interacting protein 1.
    J Genet Genomics, 2010. 37(1): p. 69-77
    [PMID:20171579]
  3. Sanyal A, et al.
    Orthologous comparisons of the Hd1 region across genera reveal Hd1 gene lability within diploid Oryza species and disruptions to microsynteny in Sorghum.
    Mol. Biol. Evol., 2010. 27(11): p. 2487-506
    [PMID:20522726]
  4. Yan WH, et al.
    A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice.
    Mol Plant, 2011. 4(2): p. 319-30
    [PMID:21148627]
  5. Xu C, et al.
    Degradation of MONOCULM 1 by APC/C(TAD1) regulates rice tillering.
    Nat Commun, 2012. 3: p. 750
    [PMID:22434193]
  6. Lin Q, et al.
    Rice APC/C(TE) controls tillering by mediating the degradation of MONOCULM 1.
    Nat Commun, 2012. 3: p. 752
    [PMID:22434195]
  7. Liang WH,Shang F,Lin QT,Lou C,Zhang J
    Tillering and panicle branching genes in rice.
    Gene, 2014. 537(1): p. 1-5
    [PMID:24345551]
  8. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]