PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0063000.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 199aa    MW: 21092.6 Da    PI: 8.2356
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0063000.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.4e-191565256
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                       +++GVr ++ +gr++AeIrdp    k++r++lg++++ae+Aa+a++aa+++l+g+
  ORGLA02G0063000.1 15 RFRGVRKRP-WGRYAAEIRDPA---KKARVWLGTYDSAEDAARAYDAAARALRGA 65
                       69*******.**********83...36*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.5E-311573IPR001471AP2/ERF domain
CDDcd000181.02E-171574No hitNo description
SMARTSM003801.7E-361578IPR001471AP2/ERF domain
PfamPF008471.4E-121564IPR001471AP2/ERF domain
PROSITE profilePS5103223.4061572IPR001471AP2/ERF domain
SuperFamilySSF541714.64E-221574IPR016177DNA-binding domain
PRINTSPR003676.4E-101627IPR001471AP2/ERF domain
PRINTSPR003676.4E-103854IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MRRGGAAEED AEAARFRGVR KRPWGRYAAE IRDPAKKARV WLGTYDSAED AARAYDAAAR  60
ALRGAKAKTN FPLSLPHAQP QLHHHHHHHL TYPAAAVVAA RPATSSLSST VESFGTRPRP  120
VLPPRPPPPP PIPDGDCRSD CGSSASVVDD DCADAAASPS CRLPFQFDLN LPPGGGGGGG  180
GGFGCAYDDE ELRLTALRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-211175166ATERF1
3gcc_A3e-211175166ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00194DAPTransfer from AT1G50640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0063000.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), ethylene and Alternaria brassicicola (locally and systemically). Moderate induction by wounding or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate slightly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by ethylene, exogenous abscisic acid (ABA), cold and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040460.0AP004046.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1145_F01.
GenBankAP0058490.0AP005849.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0031B09.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879040.11e-141ethylene-responsive transcription factor 3
SwissprotO803392e-32ERF82_ARATH; Ethylene-responsive transcription factor 3
TrEMBLI1NY241e-139I1NY24_ORYGL; Uncharacterized protein
TrEMBLQ6YUU81e-139Q6YUU8_ORYSJ; Os02g0189600 protein
STRINGORGLA02G0063000.11e-140(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51232758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.16e-12erf domain protein 9
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]