PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0052000.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 278aa    MW: 29374.5 Da    PI: 5.1311
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0052000.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_154.32.8e-17123174458
                        XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                        +kr rr+ +NRe+ArrsR+RK+a +++Le  v++L +eN +L k   +l++  ++
  ORGLA02G0052000.1 123 VKRVRRMVSNRESARRSRKRKQAHLAHLESQVDQLRGENASLFK---QLTDANQQ 174
                        79**************************************9995...55555554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.7E-17120184IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.059122174IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.96E-13123175No hitNo description
PfamPF001703.4E-14123172IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.2E-13124175No hitNo description
CDDcd147028.61E-23125175No hitNo description
PROSITE patternPS000360127142IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MDIEAFIHGG SGGGDADADH PLGIFSAADL SGFGFADSST ITGGIPNHIW PQSQNLNARH  60
PAVSTTIESQ SSICAAASPT SATNLNMKES QTLGGTSGSD SESESLLDIE GGPCEQSTNP  120
LDVKRVRRMV SNRESARRSR KRKQAHLAHL ESQVDQLRGE NASLFKQLTD ANQQFTTSVT  180
DNRILKSDVE ALRVKVKMAE DMVARGALSC GLGHLGGLSP ALNPRQACRV PDVLAGLDYA  240
GDDPFTAGLS PPEQLQMPGG EVVDAWGWDN HPNGGMSK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136142RRSRKRK
2136143RRSRKRKQ
3138143SRKRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters. {ECO:0000269|PubMed:11133985}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0052000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0534730.0AB053473.1 Oryza sativa mRNA for RISBZ4, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623252.10.0bZIP transcription factor RISBZ4-like isoform X1
SwissprotQ6H5000.0RSBZ4_ORYSJ; bZIP transcription factor RISBZ4
TrEMBLI1NXR40.0I1NXR4_ORYGL; Uncharacterized protein
STRINGORGLA02G0052000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20953796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.11e-36basic leucine zipper 9
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]