|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
ORGLA02G0051600.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
Family |
Trihelix |
Protein Properties |
Length: 428aa MW: 45701.5 Da PI: 4.1699 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
ORGLA02G0051600.1 | genome | AGI | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 29 | 2.9e-09 | 74 | 152 | 1 | 71 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm........rergferspkqCkekwenlnkrykkikegekkr 71
+Wt e+laL++ + +++ +r+ ++ ++W+ v++++ r rg r + +C+ +we l+ +y ++++e ++
ORGLA02G0051600.1 74 EWTPAETLALVAEVAAVDDGWSRSVSAFQKWAIVAENLaasrgraaRGRGRGRAASECRRRWEALAAEYGVVRRWEVRG 152
5*******************************************9999999**********************999876 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 428 aa
Download sequence Send
to blast |
MAMDPDAAEW PCIIQALPAL PPSPSSTGVP RLPTMVQALP AATDPPPAAA AAARLRRGAE 60 PPSPRRTRSG GAPEWTPAET LALVAEVAAV DDGWSRSVSA FQKWAIVAEN LAASRGRAAR 120 GRGRGRAASE CRRRWEALAA EYGVVRRWEV RGAGGYWRMS AAARRKAGLP ADFDAEVYGA 180 MEALTLVEEA LLADATAGAG GAEIGEKSAA AAEVGEGDEV EAGEEDGNGD RGEVGEEDEG 240 EVGEDGEEED GNEMLEVEDD GNADDEDAQP DAMQGQHMSS SLNIISAYWY LSKDEVCETG 300 ANNEGKKSQT DACELANKLQ ENAQHIHMLL KEEAGENENH NLAISSDSME TTRQKGDELI 360 KSLGGLVSYL NQFTDLIKEN GFENVVGLWQ TLLPALASPF LSAIVYFSVW QSAVLGRFSA 420 LYSRIPWI
|
Nucleic Localization
Signal ? help
Back to Top |
|
No. |
Start |
End |
Sequence |
1 | 116 | 126 | RAARGRGRGRA |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AP005772 | 0.0 | AP005772.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0073A21. |
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Best hit in Arabidopsis thaliana ? help
Back to Top |
Hit ID |
E-value |
Description |
AT4G31270.1 | 3e-11 | sequence-specific DNA binding transcription factors |