PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0043200.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 427aa    MW: 49129.5 Da    PI: 9.6699
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0043200.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.52e-071134126
                       --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                       ykt+lC  ++r G C++ d+C+FaHg
  ORGLA02G0043200.1 11 YKTKLCALWQR-GNCNR-DTCSFAHG 34
                       9**********.*****.*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.104.0E-11542IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.83E-5939IPR000571Zinc finger, CCCH-type
SMARTSM003560.00161035IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.1361036IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-51134IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MLGPPRRGPA YKTKLCALWQ RGNCNRDTCS FAHGHGDIRR PPSSRGGAFP HHPGRRDYRG  60
GDFRGRIDRR FSPRRRHSPG RESRGHRPLY DRRPSSRERD SSYSRSPSRK SERRHEKKTD  120
DGETNSSRSL SLSDNNDEKK KDKFSSGDEK EDHEKQLKQI RLDMEALRDD KTQMEVILDE  180
KIDEVRKISS KVNDLEVQLR REKDECHRMT SKMKKFIKAH ARFLKAQEEV KRSQARFERL  240
GDLLASDILK RGVNEEGSSV NEDLNERSPN TAATKKRSIP YSTSEEAKAV KKRRERDSDT  300
MTRSDKYRSD GTDFDKTSKG TEATKSLYLK KKLWEDEKNK LGANIFTEKV KGSPVRHVLP  360
STGMAAHAID DLNEAIELED RHESIDALLE NDADDKTRSP AIPLQPPPVV QNAYEQYEGD  420
DEEVDVE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1274293KKRSIPYSTSEEAKAVKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0043200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0651980.0AK065198.1 Oryza sativa Japonica Group cDNA clone:J013002E19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624712.10.0zinc finger CCCH domain-containing protein 13 isoform X3
SwissprotQ6H7U20.0C3H13_ORYSJ; Zinc finger CCCH domain-containing protein 13
TrEMBLI1NXH60.0I1NXH6_ORYGL; Uncharacterized protein
STRINGORGLA02G0043200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38822943
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.12e-22C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]