PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0040900.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 203aa    MW: 20556.6 Da    PI: 5.6365
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0040900.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.2e-181262256
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                       +y+GVr+++ +gr++AeIrdp    k++ ++lg+f++ae Aa+a++aa+++l+g+
  ORGLA02G0040900.1 12 RYRGVRRRP-SGRYAAEIRDPA---KKTPIWLGTFDSAEAAARAYDAAARSLRGA 62
                       69*******.7*********83...36*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.4E-291270IPR001471AP2/ERF domain
PfamPF008477.1E-121261IPR001471AP2/ERF domain
CDDcd000185.02E-151268No hitNo description
PROSITE profilePS5103222.0761269IPR001471AP2/ERF domain
SMARTSM003801.3E-341275IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-211271IPR016177DNA-binding domain
PRINTSPR003678.6E-81324IPR001471AP2/ERF domain
PRINTSPR003678.6E-83551IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MAGVGVGEGE VRYRGVRRRP SGRYAAEIRD PAKKTPIWLG TFDSAEAAAR AYDAAARSLR  60
GAAARTNFPP STSSSAPPPP PPQHQPPQHL PPAAAAATSS HSSTVESWGV TVAAAAASAG  120
ALGLPPPRNG GSNPAADEDC RSYCGSSSSV LCEDGASGAG DEAAAPRCSP LPFDLNLPAS  180
SPSAAAAAEA DEMDWRCDTL LHL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-21373576Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0040900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2875590.0AK287559.1 Oryza sativa Japonica Group cDNA, clone: J065023L05, full insert sequence.
GenBankAP0048430.0AP004843.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:B1103G11.
GenBankAP0048710.0AP004871.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0419H03.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623823.11e-140ethylene-responsive transcription factor 3
TrEMBLI1NXF31e-139I1NXF3_ORYGL; Uncharacterized protein
TrEMBLQ6ET471e-139Q6ET47_ORYSJ; Os02g0158000 protein
STRINGORGLA02G0040900.11e-140(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61022347