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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
ORGLA02G0014200.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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| Family |
bHLH |
| Protein Properties |
Length: 421aa MW: 44263.7 Da PI: 4.477 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| ORGLA02G0014200.1 | genome | AGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 37.4 | 4.6e-12 | 157 | 200 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
e+Er+RR+++N + +Lr+l+P+ +K++ a+iL A++YI Lq
ORGLA02G0014200.1 157 EAERKRRKKLNGHLYKLRSLVPNI-----TKMDRASILGDAIDYIVGLQ 200
89*********************7.....7***************9887 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009555 | Biological Process | pollen development |
| GO:0048657 | Biological Process | anther wall tapetum cell differentiation |
| GO:0005634 | Cellular Component | nucleus |
| GO:0000978 | Molecular Function | RNA polymerase II core promoter proximal region sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 421 aa
Download sequence Send
to blast |
MAEEQQMAEL VMAQCGGGGG GGAGDDGGGQ AWPPPETPSF QWDGGADAQR LMYGGSSLNL 60
FDAAAADDDP FLGGGGGGGG DAVGDAAAAA GAWPYAGMAM SEPSVAVAQE QMQHAAGGGV 120
AESGSEGREL HGGDPEDDGD GEGRSGGAKR QQCKNLEAER KRRKKLNGHL YKLRSLVPNI 180
TKMDRASILG DAIDYIVGLQ KQVKELQDEL EDNHVHHKPP DVLVDHPPPA SLVGLDNDDA 240
SPPNSHQQQP PLAVAGSSSR RSNKDPAMTD DKVGGGGGGG HRMEPQLEVR QVQGNELFVQ 300
VLWEHKPGGF VRLMDAMNAL GLEVINVNVT TYKTLVLNVF RVMVRDNEVA MQADRVRDSL 360
LEVTRETYPG VWPSPQEEDD AKFDGGDGGQ AAAAAAAAGG EHYHDEVGGG YHQHLHYLAF 420
D
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| Nucleic Localization
Signal ? help
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| No. |
Start |
End |
Sequence |
| 1 | 158 | 165 | ERKRRKKL |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development. Promotes tapetal PCD. Positively regulates the expression of two tapetum-specific genes, the cysteine protease CP1 and the lipid-transfer protein C6 (PubMed:17138695). Acts upstream from and interacts with EAT1/DTD in the regulation of tapetal PCD (PubMed:23385589). Regulates the expression of genes related to aliphatic metabolism during pollen development. May play regulatory role in the lipidic metabolism involved in the formation of pollen wall (PubMed:19825565). {ECO:0000269|PubMed:17138695, ECO:0000269|PubMed:19825565, ECO:0000269|PubMed:23385589}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK106761 | 0.0 | AK106761.1 Oryza sativa Japonica Group cDNA clone:002-115-D12, full insert sequence. |
| GenBank | AK119580 | 0.0 | AK119580.1 Oryza sativa Japonica Group cDNA clone:002-117-B12, full insert sequence. |
| Publications
? help Back to Top |
- Endo M, et al.
High temperatures cause male sterility in rice plants with transcriptional alterations during pollen development.
Plant Cell Physiol., 2009. 50(11): p. 1911-22
[PMID:19808807] - Xu J,Wu M,He C
[Identification and functional analysis of Tdrxoo, the member of TonB-dependent-receptor family proteins in Xanthomonas oryzae pv. oryzae].
Wei Sheng Wu Xue Bao, 2010. 50(2): p. 155-61
[PMID:20387456] - Liu Z,Bao W,Liang W,Yin J,Zhang D
Identification of gamyb-4 and analysis of the regulatory role of GAMYB in rice anther development.
J Integr Plant Biol, 2010. 52(7): p. 670-8
[PMID:20590996] - Zhang D, et al.
OsC6, encoding a lipid transfer protein, is required for postmeiotic anther development in rice.
Plant Physiol., 2010. 154(1): p. 149-62
[PMID:20610705] - Senapati PK,Behera S
Experimental investigation on an entrained flow type biomass gasification system using coconut coir dust as powdery biomass feedstock.
Bioresour. Technol., 2012. 117: p. 99-106
[PMID:22613886] - Zhang SR,Dong DM,Zheng WG,Zhao XD,Wang JH
[Laser-induced fluorescence spectroscopy characterization of farmland soil moisture content].
Guang Pu Xue Yu Guang Pu Fen Xi, 2012. 32(10): p. 2623-7
[PMID:23285852] - Li L, et al.
An anther development F-box (ADF) protein regulated by tapetum degeneration retardation (TDR) controls rice anther development.
Planta, 2015. 241(1): p. 157-66
[PMID:25236969] - Yi J, et al.
Defective Tapetum Cell Death 1 (DTC1) Regulates ROS Levels by Binding to Metallothionein during Tapetum Degeneration.
Plant Physiol., 2016. 170(3): p. 1611-23
[PMID:26697896]
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