PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0395900.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 142aa    MW: 15514.8 Da    PI: 9.8806
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0395900.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.21.3e-192458135
               GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                       C+ C+ttkTplWR gp g+k+LCnaCG++yrk+++
  ORGLA01G0395900.1 24 CADCHTTKTPLWRGGPGGPKSLCNACGIRYRKRRR 58
                       ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.7031854IPR000679Zinc finger, GATA-type
SMARTSM004017.2E-161875IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.28E-121957No hitNo description
Gene3DG3DSA:3.30.50.101.5E-152258IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.74E-142358No hitNo description
PROSITE patternPS0034402449IPR000679Zinc finger, GATA-type
PfamPF003202.1E-172458IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MDMDSSSSPV DKVDPDECNG SKACADCHTT KTPLWRGGPG GPKSLCNACG IRYRKRRRAA  60
LGLDSAATAT ATDGAEQQKK TKAKKEKAQE EEVTMELHTV GFRSKDAAVL KQRRRMRRRK  120
CLGEEERAAI LLMALSSGVI YA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15357RKRRR
2111117QRRRMRR
3112119RRRMRRRK
4113118RRMRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00554DAPTransfer from AT5G49300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0395900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2416430.0AK241643.1 Oryza sativa Japonica Group cDNA, clone: J065189M03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641177.11e-100GATA transcription factor 16
TrEMBLA0A0D3EZC51e-99A0A0D3EZC5_9ORYZ; Uncharacterized protein
TrEMBLI1NVR91e-99I1NVR9_ORYGL; Uncharacterized protein
STRINGORGLA01G0395900.11e-100(Oryza glaberrima)
STRINGOBART01G45830.11e-100(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24183892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.14e-24GATA transcription factor 16