PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0348000.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 276aa    MW: 30756 Da    PI: 6.6316
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0348000.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS202.42.7e-6281275175374
               GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266
                         +ef++ v ++le+l++e+L ++ +Ea+a+n+vl+lh +++e+    +   +vL++++ lsP+ +v+veq+a hn++ Fl rf+eal+yy+a
  ORGLA01G0348000.1  81 YLEFRA-VDRSLESLHIEDLGIDADEAVAINSVLELHPVVKENRGALN---SVLQTIRMLSPRAFVLVEQDAGHNGPFFLGRFMEALQYYAA 168
                        589**9.799*****************************987766666...8**************************************** PP

               GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
                        lfd+l+a+lpr    r+ vE++ +g ei+nvv  ega+r+erhe++ +Wr+r+++aGF++vp +  aak  + l+++ ++dgy+v ee+g+l
  ORGLA01G0348000.1 169 LFDALDAELPRYGARRARVEQFHFGTEIRNVVGWEGAARVERHERADQWRRRMSRAGFQSVPTK-MAAKAREWLVENAGGDGYTVAEEKGCL 259
                        **************************************************************86.56677899999999************* PP

               GRAS 359 vlgWkdrpLvsvSaWr 374
                        vlgWk++p++++S+W+
  ORGLA01G0348000.1 260 VLGWKGKPVIAASCWK 275
                        ***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098529.2991256IPR005202Transcription factor GRAS
PfamPF035149.2E-6081275IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MEMDKFSSSY QPSWPPAQAT VDVVGSVETP ARRAFQRVAS FFVQELLDRR ASTGAGPCEH  60
GVLHPAVVVR EAYAEGLGMM YLEFRAVDRS LESLHIEDLG IDADEAVAIN SVLELHPVVK  120
ENRGALNSVL QTIRMLSPRA FVLVEQDAGH NGPFFLGRFM EALQYYAALF DALDAELPRY  180
GARRARVEQF HFGTEIRNVV GWEGAARVER HERADQWRRR MSRAGFQSVP TKMAAKAREW  240
LVENAGGDGY TVAEEKGCLV LGWKGKPVIA ASCWKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-2573274182378Protein SCARECROW
5b3h_A4e-2573274181377Protein SCARECROW
5b3h_D4e-2573274181377Protein SCARECROW
5hyz_A3e-2573275170375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0348000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0037910.0AP003791.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1065G12.
GenBankAP0067570.0AP006757.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0551C06.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814052.11e-129DELLA protein RGL1-like
TrEMBLI1NUE00.0I1NUE0_ORYGL; Uncharacterized protein
STRINGORGLA01G0348000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56403354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17490.12e-41RGA-like protein 3