PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0347800.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 496aa    MW: 53643.8 Da    PI: 6.2455
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0347800.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS303.45.5e-9320449579374
               GRAS  79 aalklfsevsPilkfshltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerL 165
                         al l +e++P+l+f+h++aN  +lea+ege+ vH++D++++     G QW  Ll+ La+R++g+p ++R+Tgvg+    + ++++++g+ L
  ORGLA01G0347800.1 204 EALALAYELCPYLRFAHFVANACMLEAFEGESNVHVVDLGMTlgldRGHQWRGLLDGLAARASGKPaRVRVTGVGA----RMDTIRAIGREL 291
                        5666789*******************************98762222567*************77666*********....9*********** PP

               GRAS 166 akfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerf 257
                        + +Ae lg+ +ef+  + + le+l++++L v+ +Ea+a+n+vl+lh++++es    +   +vL+++++lsP+ + +veq+a hn++ Fl rf
  ORGLA01G0347800.1 292 EAYAEGLGMYLEFRG-INRGLESLHIDDLGVDADEAVAINSVLELHSVVKESRGALN---SVLQTIRKLSPRAFLLVEQDAGHNGPFFLGRF 379
                        ***************.799******************************88877777...8******************************* PP

               GRAS 258 lealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdg 348
                        +eal+yy+alfd+l+a lpr +  r+ vE++ +g ei+nvv cega+r+erhe++ +Wr+r+++aGF++vp++    ++a+  l + + + g
  ORGLA01G0347800.1 380 MEALHYYAALFDALDAALPRYDARRARVEQFHFGAEIRNVVGCEGAARVERHERADQWRRRMSRAGFQSVPIKMA--AKAREWLDENAgGGG 469
                        ************************************************************************754..467777777776999 PP

               GRAS 349 yrveeesgslvlgWkdrpLvsvSaWr 374
                        y+v ee+g+lvlgWk++p++++S+W+
  ORGLA01G0347800.1 470 YTVAEEKGCLVLGWKGKPVIAASCWK 495
                        *************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098549.71979476IPR005202Transcription factor GRAS
PfamPF035141.9E-90204495IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MGMSPEPCNS ISDCSQQQSH HLTLTQQQDS TIICTNQELD YYYRFYDVDE AAFDGNEVEL  60
VSRFSKVTRM DRMISSPYQP TWSPAQAAVD VVGSSETSRV RKKRFWDVLE SCKQKVEAME  120
AMDTPATATF RVGAGDGGGG GGGGAGGGGG GADGMRLVQL LVACAEAGLA DRLALAHPPA  180
LGPASMAFCI PPSSCAGRDG ARGEALALAY ELCPYLRFAH FVANACMLEA FEGESNVHVV  240
DLGMTLGLDR GHQWRGLLDG LAARASGKPA RVRVTGVGAR MDTIRAIGRE LEAYAEGLGM  300
YLEFRGINRG LESLHIDDLG VDADEAVAIN SVLELHSVVK ESRGALNSVL QTIRKLSPRA  360
FLLVEQDAGH NGPFFLGRFM EALHYYAALF DALDAALPRY DARRARVEQF HFGAEIRNVV  420
GCEGAARVER HERADQWRRR MSRAGFQSVP IKMAAKAREW LDENAGGGGY TVAEEKGCLV  480
LGWKGKPVIA ASCWKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-50212494105378Protein SCARECROW
5b3h_A5e-50212494104377Protein SCARECROW
5b3h_D5e-50212494104377Protein SCARECROW
5hyz_A5e-5019149562375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0347800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0037910.0AP003791.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1065G12.
GenBankAP0067570.0AP006757.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0551C06.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646199.10.0DELLA protein RGL1
TrEMBLI1NUD80.0I1NUD8_ORYGL; Uncharacterized protein
STRINGORGLA01G0347800.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56403354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.15e-59RGA-like 1