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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA01G0324200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 261aa MW: 27156.6 Da PI: 7.3146 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.4 | 4.9e-20 | 37 | 86 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f tae Aa+a+++a+++++g ORGLA01G0324200.1 37 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFETAEAAARAYDEAALRFRG 86 7********.**********7.....337************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.77E-22 | 37 | 95 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.3E-36 | 37 | 100 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.686 | 37 | 94 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.0E-33 | 37 | 95 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.0E-14 | 37 | 86 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.9E-12 | 38 | 49 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.11E-15 | 45 | 96 | No hit | No description |
PRINTS | PR00367 | 6.9E-12 | 60 | 76 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
SEQSSDTQSA SAATMDEHHS PVGGGGNAEG PDTPRRRYRG VRQRPWGKWA AEIRDPHKAA 60 RVWLGTFETA EAAARAYDEA ALRFRGSRAK LNFPEDARLY PAAATTTTAA PPPAPVAAAS 120 PSAAIYPGAS QSAEYLRYQM LLQGRLTTAT PNQGTLLPFY GGGGGGGSMT NPYGGGGGGA 180 MSGFLGSYYS FPTPSVSVAT VPSSTSSAPG NYYSSHGGSH QSMSAAEEWN WENALVYPAT 240 AASWSESSYH HQPPAAAAHA V |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-24 | 38 | 94 | 6 | 63 | ATERF1 |
3gcc_A | 5e-24 | 38 | 94 | 6 | 63 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA01G0324200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003286 | 0.0 | AP003286.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0677H08. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015613619.1 | 1e-180 | ethylene-responsive transcription factor ABR1 | ||||
TrEMBL | I1NTQ2 | 0.0 | I1NTQ2_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA01G0324200.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6232 | 26 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50080.1 | 5e-20 | ethylene response factor 110 |