PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0322000.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 904aa    MW: 97555.5 Da    PI: 6.3899
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0322000.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.50.000277077441355
                        HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        R+ i +++ eLre++P++      K s  + Lek+++++  Lq
  ORGLA01G0322000.1 707 RQMIQDRIKELREIVPNS-----AKCSIDTLLEKTIKHMLFLQ 744
                        77899************6.....5899999*********9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.3E-357193IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000834.19E-4688745No hitNo description
PROSITE profilePS5088810.594694743IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.98E-5707749IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-4707748IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010078Biological Processmaintenance of root meristem identity
GO:0010089Biological Processxylem development
GO:0010479Biological Processstele development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 904 aa     Download sequence    Send to blast
MAGAAPLRDS LRRLCTDVGW SYAVFWRATR AADSQRLKLV WGDGHYERAA GAPSISGFEA  60
MDLLLKEKAA ALRSGTGRGG GGGEGHAADG AAGHGHDRVD ALVHKAMAQQ VHVVGEGVIG  120
QAALTGLHRW IVHDIVDECE EEDEVLLEMK GQFCAGIQTI AVIPVLPRGV IQLGSTKMVM  180
EEAAFIDHVR SLFQQLGSST AVVPCGSFVQ DSIMRTPFHK SLGVPTSSHS EDLAGGGNTY  240
NDDMINHQFR HQKSPASTIQ SFNPVQQFYA GPTFCRPVTI ASRCDLFQPD HGSTFTLNSQ  300
SEDNRSTALL KNSVSHSKTS NDAFSHAFNP LNEPNVSISG RRECVSIEQH GSCRNGEMEI  360
TIGRTASSSC TGKTNIINKV DDLLSQDCLV DCQASNATSM NRKFQTMSIV DNTKLQDGSY  420
AIPHAALVDS TRYSDCFQSL LGTIQGSSSS NSNAIHVDTS HNAVHGKSNF CPLGDRNAAN  480
SSDLAELLAS PIPLELTGGN DLFDVLQLQQ KPNGSNNSEV NNRQSMPYGS EQAVKSLIGC  540
VDDDFTGLIT EADPDQLLDA IVSKIITGHK QNVDTSASCS TTVAGFDRPL HSDCHLYTTG  600
PSSGPIFCNF ASVAPVAIKT EGPAAGSRQS SSSIDKSAGC SQTQESYKSQ IRLWVENNHS  660
VGSDSLSTGQ ASDSLSTGQC KRSDEIGKSN RKRSRPGESA RPRPKDRQMI QDRIKELREI  720
VPNSAKCSID TLLEKTIKHM LFLQNVAKHA DKLKKSGEPK IVSQEEGLLL KDNFEGGATW  780
AFEVGTRSMT CPIIVEDLNP PRQMLVEMLC KERGIFLEIA DQIRGLGLTI LKGVMEVRKD  840
KIWARFAVEA NKDVTRMEIF LSLVHLLEPS TGSSILSAGV ENTSLPRDSF FPSSIPATGF  900
SNCL
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0322000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0680330.0AK068033.1 Oryza sativa Japonica Group cDNA clone:J013129B18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619837.10.0transcription factor LHW isoform X4
TrEMBLI1NTN00.0I1NTN0_ORYGL; Uncharacterized protein
STRINGORGLA01G0322000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP161891314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.15e-56conserved peptide upstream open reading frame 7