PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA01G0307300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 188aa MW: 19907.8 Da PI: 6.7721 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 54.2 | 2.9e-17 | 2 | 39 | 21 | 58 |
-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 21 prsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 rsYY+Cts++C++kk+ve+s++dp+++++tYeg+H+h ORGLA01G0307300.1 2 CRSYYKCTSSRCSAKKHVEKSTDDPEMLIVTYEGSHHH 39 69***********************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 16.696 | 1 | 42 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.1E-8 | 1 | 41 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.0E-15 | 2 | 40 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.6E-12 | 2 | 39 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.1E-13 | 3 | 41 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
KCRSYYKCTS SRCSAKKHVE KSTDDPEMLI VTYEGSHHHG PQPLFPPHIA QPPPPTSVVG 60 FSAASGAGPP PSSPAAAARK RKNYVRAAFS PTTSEDDGDG AGRLRPEWPQ DDGTSCDVAE 120 LRRRGDAEHA APRRVATDRS CDDGGGGGST SASSSVARAD AATALSSDSP PTIWSCLDWP 180 WSQETLFL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA01G0307300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003240 | 0.0 | AP003240.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0406G08. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015635485.1 | 1e-130 | WRKY transcription factor WRKY28 | ||||
TrEMBL | I1NT83 | 1e-133 | I1NT83_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA01G0307300.1 | 1e-134 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13144 | 26 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37260.2 | 7e-13 | WRKY family protein |