PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA01G0292000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 358aa MW: 37836.6 Da PI: 5.242 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 70.6 | 2.2e-22 | 136 | 197 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSS..TTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaed..pkvveitYegeHnh 58 dDgy+WrKYGqK++++++fprsYYrC+++ +Cp++k+v++ + d p + +++Y+ eH++ ORGLA01G0292000.1 136 DDGYQWRKYGQKKINNTNFPRSYYRCSYHrerRCPAQKHVQQRDGDdvPALHVVVYTHEHTC 197 8***************************99999*******99887645678899******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.3E-24 | 121 | 197 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.48E-21 | 130 | 197 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.7E-31 | 135 | 199 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.9E-23 | 136 | 197 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 18.326 | 136 | 198 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MQAQSRLAAA ASGGGGSGIS GSGGISRLGG GAGEEHEAVV RELTRGHELT ARLRAEALRA 60 LRGQGQAEAT ATFILGEVSR AFTVCLSIMA SASPSASPPQ PDETPPADSA VSPPPPRAAR 120 EDNVPRKRLL TASPYDDGYQ WRKYGQKKIN NTNFPRSYYR CSYHRERRCP AQKHVQQRDG 180 DDVPALHVVV YTHEHTCLQG APAELPDAAT NGGAAAAASP DYFPAGGETP SSLRRLRGVG 240 GGGLQPQFVD HRAAMEERER QVLVSSLARV LQGRQCYDDD DDDDTDVASL GAVHARAPAA 300 AAPVAASSSS SGPVDAAGEE LDVMDYDMTD ALFWGPFGTD SNSYDGNLTS TRCFDLIN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 6e-15 | 136 | 197 | 9 | 68 | OsWRKY45 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA01G0292000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003302 | 0.0 | AP003302.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0703B11. | |||
GenBank | AP003348 | 0.0 | AP003348.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0485B12. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025877887.1 | 0.0 | probable WRKY transcription factor 4 | ||||
TrEMBL | A0A0E0N483 | 0.0 | A0A0E0N483_ORYRU; Uncharacterized protein | ||||
TrEMBL | I1NST0 | 0.0 | I1NST0_ORYGL; Uncharacterized protein | ||||
STRING | ORUFI01G38680.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | ORGLA01G0292000.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12538 | 28 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11070.2 | 1e-17 | WRKY family protein |