PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0275300.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 709aa    MW: 78115.2 Da    PI: 7.5272
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0275300.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox42.31.3e-1368122256
                        T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        r+ +++t +q e+Le +F  + +p+  ++++L++ +gL  +qVk+WFqN+R++ k
  ORGLA01G0275300.1  68 RRLQRLTGKQSEVLEGFFSICGHPDDGQKRHLSETTGLGLDQVKFWFQNKRTQVK 122
                        445789*********************************************9877 PP
2START88.91.1e-282224372205
                        HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S...EEEE CS
              START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla...kaet 81 
                        la  a+ +l+ +a++  ++W+ ++    e +n++ + q  + +++     +++ea ra+ +v m+   +v  l+d    + + ++   + ++
  ORGLA01G0275300.1 222 LAKNAMHALIILAESHVALWFPVPgcsyEVLNKMAYDQAYPGDNSanaigFKTEATRAVSMVMMDYKSVVDFLMDPY-NYRTFFPeviSGAV 312
                        6788999999**************999988888888888866666888999****************6665555555.55555554449999 PP

                        EEEECTT.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEE CS
              START  82 levissg.......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvt 165
                        +++i +        g++qlm+ e++++splvp R+ +f+Ry+  l++g  v+ dvS+d  +  +      ++++ pSg+li++   + +kvt
  ORGLA01G0275300.1 313 TNRIYTWptsdgynGVIQLMTVEMMFPSPLVPaRKCTFLRYCNVLNEGLVVVIDVSLDDGSIFS------KCRKMPSGFLIQSIRPNSCKVT 398
                        999977777789*********************************************9988866......7********************* PP

                        EEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
              START 166 wvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                         +ehv  ++  +h+l+++ ++ gl++ga++wvat+ rq +
  ORGLA01G0275300.1 399 AIEHVLADDTGVHELYQPCMN-GLVFGARRWVATMARQSA 437
                        ******************985.89***********99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.8E-1559126IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.6E-1459118IPR009057Homeodomain-like
PROSITE profilePS5007114.26864124IPR001356Homeobox domain
CDDcd000861.53E-1265124No hitNo description
SMARTSM003893.5E-1066128IPR001356Homeobox domain
PfamPF000463.4E-1168122IPR001356Homeobox domain
PROSITE patternPS00027099122IPR017970Homeobox, conserved site
PROSITE profilePS5084818.551212441IPR002913START domain
CDDcd088755.21E-94216437No hitNo description
SMARTSM002341.7E-7221438IPR002913START domain
PfamPF018521.2E-21222437IPR002913START domain
SuperFamilySSF559612.93E-20271436No hitNo description
SuperFamilySSF559611.1E-8455663No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    Send to blast
MEMNQQHNEG NESFVALMNG VAGDGTATLP NDGEQSMSIP ARELFAAIEA DSGLLPVNSS  60
NTNEKRKRRL QRLTGKQSEV LEGFFSICGH PDDGQKRHLS ETTGLGLDQV KFWFQNKRTQ  120
VKTMCWKEEN YKLSVENEIL RDENRRVKIA HCTAICLTCR NSSVQNQLAV EMERLMGQSE  180
RLQQEIARSN GTPPAANLAF QLNSSADYVF SGQHDQQMIA ELAKNAMHAL IILAESHVAL  240
WFPVPGCSYE VLNKMAYDQA YPGDNSANAI GFKTEATRAV SMVMMDYKSV VDFLMDPYNY  300
RTFFPEVISG AVTNRIYTWP TSDGYNGVIQ LMTVEMMFPS PLVPARKCTF LRYCNVLNEG  360
LVVVIDVSLD DGSIFSKCRK MPSGFLIQSI RPNSCKVTAI EHVLADDTGV HELYQPCMNG  420
LVFGARRWVA TMARQSARMR DVHHNKTAPQ VSTKGRKNLM KLADDLLASF AGGITATGGG  480
TWTVVIGAGT EKDIRVAYRR TTEGSSSYNA ILSVSASLRL PLPMRKTFDL LRNLTHRCKW  540
DVLVHGSVVK EEVTIARGVG NDDTVTVLHC KRAGREDRGR TMILQNNGYD ASGSFMVYSQ  600
IDSELMNTMV LSPSDLPPGR GGPSLYPTGF SLLPDVEAAQ DSSGIALGEV GGTLMTMGFQ  660
IPVKLASGDR MYSRSAASAI RLMTDTIALV KKTLMNEHSG IYGVSPFHP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0275300.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3178820.0AF317882.1 Oryza sativa transcription factor 1 (TF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632244.10.0homeobox-leucine zipper protein TF1
SwissprotQ5ZAY00.0TF1_ORYSJ; Homeobox-leucine zipper protein TF1
TrEMBLI1NSB30.0I1NSB3_ORYGL; Uncharacterized protein
STRINGORGLA01G0275300.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104752833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.21e-105HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]