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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA01G0253200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HSF | ||||||||
Protein Properties | Length: 440aa MW: 49383.3 Da PI: 5.0907 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 110.2 | 1.4e-34 | 13 | 103 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 Fl+k+ye+++d++++ ++ w+ g+sfvv ++ ef +++LpkyFkh+nf+SFvRQLn+YgF+kv+ e+ weF+++ F kg+++ ORGLA01G0253200.1 13 FLSKTYEMVDDPSTDAVVGWTPAGTSFVVANQPEFCRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPEQ---------WEFANEDFIKGQRHR 95 9***************************************************************9998.........*************** PP XXXXXXXX CS HSF_DNA-bind 94 lekikrkk 101 l++i+r+k ORGLA01G0253200.1 96 LKNIHRRK 103 ******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 3.1E-61 | 9 | 102 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 8.98E-34 | 9 | 102 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 2.5E-37 | 10 | 102 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 1.1E-20 | 13 | 36 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 7.7E-31 | 13 | 102 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-20 | 51 | 63 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 52 | 76 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-20 | 64 | 76 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009958 | Biological Process | positive gravitropism | ||||
GO:0048527 | Biological Process | lateral root development | ||||
GO:0048530 | Biological Process | fruit morphogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 440 aa Download sequence Send to blast |
MEGGGGGGSL PPFLSKTYEM VDDPSTDAVV GWTPAGTSFV VANQPEFCRD LLPKYFKHNN 60 FSSFVRQLNT YGFRKVDPEQ WEFANEDFIK GQRHRLKNIH RRKPIFSHSS HSQGAGPLTD 120 NERKDYEEEI ERLKSDNAAL SSELQNNTLK KLNMEKRMQA LEEKLFVVED QQRSLISYVR 180 EIVKAPGFLS SFVQQQDHHR KKRRLPIPIS FHEDANTQEN QIMPCDLTNS PAQTFYRESF 240 DKMESSLNSL ENFLQEASEE FGNDISYDDG VPGPSSTVVL TELHSPGESD PRVSSPPTRM 300 RTSSAGAGDS HSSRDVAEST SCAESPPIPQ MHSRVDTRAK VSEIDVNSEP AVTETGPSRD 360 QPAEEPPAVT PGANDGFWQQ FLTEQPGSSD AHQEAQSERR DGGNKVDEMK SGDRQHLWWG 420 KRNVEQITEK LGHLTSTEKT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 4e-27 | 3 | 102 | 19 | 129 | Heat shock factor protein 1 |
5d5v_B | 4e-27 | 3 | 102 | 19 | 129 | Heat shock factor protein 1 |
5d5v_D | 4e-27 | 3 | 102 | 19 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA01G0253200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK109856 | 0.0 | AK109856.1 Oryza sativa Japonica Group cDNA clone:002-148-G05, full insert sequence. | |||
GenBank | AY344491 | 0.0 | AY344491.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF9 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015615651.1 | 0.0 | heat stress transcription factor A-4b | ||||
Swissprot | Q94J16 | 0.0 | HFA4B_ORYSJ; Heat stress transcription factor A-4b | ||||
TrEMBL | A0A0D3EU06 | 0.0 | A0A0D3EU06_9ORYZ; Uncharacterized protein | ||||
TrEMBL | I1NRP2 | 0.0 | I1NRP2_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA01G0253200.1 | 0.0 | (Oryza glaberrima) | ||||
STRING | OBART01G30880.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3296 | 37 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45710.1 | 5e-88 | HSF family protein |
Publications ? help Back to Top | |||
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